Browse Element(s) Details


Os.17079.1.S1_at

Description gb:AK111773.1
DB_XREF= gi:37988436
TID=Os.17079.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17079 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023063D20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023063D20, full insert sequence.
FL= gb:AK111773.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5842011/11MLO-like protein 14, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58390Os.18070.1.S1_at4/114+34519017..34523242allantoinase, putative, expressed
LOC_Os04g58390Os.30557.2.S2_x_at1/114+34519017..34523242allantoinase, putative, expressed
LOC_Os04g58400OsAffx.14468.1.S1_at8/114+34524408..34530702tRNA synthetases class I family protein, expressed
LOC_Os04g58410Os.17778.2.S1_x_at11/114+34532434..34536998MutS domain V family protein, expressed
LOC_Os04g58410Os.17778.2.S1_at11/114+34532434..34536998MutS domain V family protein, expressed
LOC_Os04g58410Os.17778.1.S1_at11/114+34532434..34536998MutS domain V family protein, expressed
LOC_Os04g58420Os.17079.1.S1_at11/114+34542155..34544423MLO-like protein 14, putative, expressed
LOC_Os04g58420OsAffx.14469.1.S1_x_at11/114+34542155..34544423MLO-like protein 14, putative, expressed
LOC_Os04g58430NANA4+34546356..34547261hypothetical protein
LOC_Os04g58440NANA4+34548256..34549160hypothetical protein
LOC_Os04g58450OsAffx.20387.1.S1_x_at1/114+34549967..34556167retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g58460NANA4+34557648..34558010expressed protein
LOC_Os04g58470Os.8304.1.S1_at10/114+34561432..34566061expressed protein
LOC_Os04g58470OsAffx.4211.1.S1_at4/114+34561432..34566061expressed protein
LOC_Os04g58480Os.54552.1.S1_at11/114+34568301..34571150EF hand family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0008219biological_processcell death
GO:0005886cellular_componentplasma membrane
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17079.1.S1_at--659--6471Chr04:34544239..34544263 (25 bp)
GATAGATGTAATTTAACTTTAGGAA
LOC_Os04g58420
Os.17079.1.S1_at--355--11Chr04:34544267..34544291 (25 bp)
AGTTCGAATCGGAGGAATTTTGGAG
LOC_Os04g58420
Os.17079.1.S1_at--829--6151Chr04:34544299..34544323 (25 bp)
GAGGATTTCAACTAAATCCTGTAAA
LOC_Os04g58420
Os.17079.1.S1_at--329--2231Chr04:34544322..34544346 (25 bp)
AAATTCGTTCCAAAGGAGTCCTGAG
LOC_Os04g58420
Os.17079.1.S1_at--1002--6671Chr04:34544328..34544352 (25 bp)
GTTCCAAAGGAGTCCTGAGTGTATT
LOC_Os04g58420
Os.17079.1.S1_at--832--9231Chr04:34544340..34544364 (25 bp)
TCCTGAGTGTATTGGACTTTGTACA
LOC_Os04g58420
Os.17079.1.S1_at--290--31Chr04:34544350..34544374 (25 bp)
ATTGGACTTTGTACATGGATCAACC
LOC_Os04g58420
Os.17079.1.S1_at--1106--51Chr04:34544382..34544406 (25 bp)
ATTGAAGCGTCATTACTGGAGAACC
LOC_Os04g58420
Os.17079.1.S1_at--779--1631Chr04:34544387..34544411 (25 bp)
AGCGTCATTACTGGAGAACCTTCTT
LOC_Os04g58420
Os.17079.1.S1_at--1005--7091Chr04:34544390..34544414 (25 bp)
GTCATTACTGGAGAACCTTCTTCCA
LOC_Os04g58420
Os.17079.1.S1_at--974--8051Chr04:34544399..34544423 (25 bp)
GGAGAACCTTCTTCCAGCTTTCGAC
LOC_Os04g58420
Target Sequence 
GATAGATGTAATTTAACTTTAGGAAGGGAGTTCGAATCGGAGGAATTTTGGAGAATTTTAGAGGATTTCAACTAAATCCT
GTAAAATTCGTTCCAAAGGAGTCCTGAGTGTATTGGACTTTGTACATGGATCAACCNATGGTAATTGAAGCGTCATTACT
GGAGAACCTTCTTCCAGCTTTCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17079.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis