Browse Element(s) Details


Os.54552.1.S1_at

Description gb:AK105582.1
DB_XREF= gi:32990791
TID=Os.54552.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54552 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-128-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-128-E08, full insert sequence.
FL= gb:AK105582.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5848011/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58420Os.17079.1.S1_at11/114+34542155..34544423MLO-like protein 14, putative, expressed
LOC_Os04g58420OsAffx.14469.1.S1_x_at11/114+34542155..34544423MLO-like protein 14, putative, expressed
LOC_Os04g58430NANA4+34546356..34547261hypothetical protein
LOC_Os04g58440NANA4+34548256..34549160hypothetical protein
LOC_Os04g58450OsAffx.20387.1.S1_x_at1/114+34549967..34556167retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g58460NANA4+34557648..34558010expressed protein
LOC_Os04g58470Os.8304.1.S1_at10/114+34561432..34566061expressed protein
LOC_Os04g58470OsAffx.4211.1.S1_at4/114+34561432..34566061expressed protein
LOC_Os04g58480Os.54552.1.S1_at11/114+34568301..34571150EF hand family protein, expressed
LOC_Os04g58490Os.14302.1.S1_s_at1/114+34571720..34572323hypothetical protein
LOC_Os04g58504Os.54466.1.S1_at11/114+34572782..34581660expressed protein
LOC_Os04g58504OsAffx.4211.1.S1_at11/114+34572782..34581660expressed protein
LOC_Os04g58504OsAffx.12909.1.S1_at2/114+34572782..34581660expressed protein
LOC_Os04g58520OsAffx.26656.1.S1_x_at11/114+34585218..34585811hypothetical protein
LOC_Os04g58520OsAffx.26656.1.S1_at11/114+34585218..34585811hypothetical protein
LOC_Os04g58530OsAffx.26656.1.S1_at11/114+34587860..34588719hypothetical protein
LOC_Os04g58530OsAffx.26656.1.S1_x_at11/114+34587860..34588719hypothetical protein
LOC_Os04g58540NANA4+34588896..34590045transposon protein, putative, Mariner sub-class
LOC_Os04g58550Os.14302.1.S1_s_at11/114+34591519..34594443membrane acyl-CoA binding protein, putative, expressed
LOC_Os04g58550Os.35349.1.S1_at11/114+34591519..34594443membrane acyl-CoA binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54552.1.S1_at--497--1371Chr04:34570130..34570262 (25 bp)
AGAGCTCAACGACTTCTTGCATCCA
LOC_Os04g58480
Os.54552.1.S1_at--758--711Chr04:34570494..34570518 (25 bp)
ATGATCGACCACAACTCCATTGTAG
LOC_Os04g58480
Os.54552.1.S1_at--840--4791Chr04:34570574..34570594 (21 bp)
GCTCGATTCTAACAATGACGGCTAT
LOC_Os04g58480
Os.54552.1.S1_at--60--5371Chr04:34570698..34570722 (25 bp)
GAAGAAGCACGTCCAGTAATCCAGA
LOC_Os04g58480
Os.54552.1.S1_at--286--9771Chr04:34570714..34570738 (25 bp)
TAATCCAGAGCCTCATCTCGGGAGA
LOC_Os04g58480
Os.54552.1.S1_at--1139--451Chr04:34570728..34570752 (25 bp)
ATCTCGGGAGAGTTTTCATATGCTA
LOC_Os04g58480
Os.54552.1.S1_at--47--5371Chr04:34570917..34570941 (25 bp)
GAAGAGATGCTGAACCACTACCTAT
LOC_Os04g58480
Os.54552.1.S1_at--717--1711Chr04:34570930..34570954 (25 bp)
ACCACTACCTATCTTTCTACAATAT
LOC_Os04g58480
Os.54552.1.S1_at--958--7971Chr04:34570964..34570988 (25 bp)
GGATGATCACTATGACTACGATGAC
LOC_Os04g58480
Os.54552.1.S1_at--804--8231Chr04:34570992..34571016 (25 bp)
GGCAACAATATCCACGATGAGCTTA
LOC_Os04g58480
Os.54552.1.S1_at--938--7011Chr04:34571115..34571139 (25 bp)
GTACATATGGGTAACTACACGCGTA
LOC_Os04g58480
Target Sequence 
AGAGCTCAACGACTTCTTGCATCCAGAAGATAGCAGCCAGGAGAAAGTGAAATTATGGCTGTTGAAGGATAAATTAAGTG
GAATGGATCACGATAGAGACGGGAAATTAAGTTTGGATGAGTTTATCAGTCAGTTTCACATGATCGACCACAACTCCATT
GTAGAGCATAGTGCTGATGATGATACTAGTTGTGCTGAAGCTGAGAAGAAGTTTCGAGAGCTCGATTCTAACAATGACGG
CTATTTGACAGTGGAAGAAGCACGTCCAGTAATCCAGAGCCTCATCTCGGGAGAGTTTTCATATGCTAAATCACATGCAA
AGCTTTTGATGAAGGCTGATGATAACAAGGACAACAAGTTGTCACTAGAAGAGATGCTGAACCACTACCTATCTTTCTAC
AATATTGTTTACATGGATGATCACTATGACTACGATGACATTGGCAACAATATCCACGATGAGCTTAGGTGACAAATTTA
GCCAAGACGGTATATATAAACTGTTCCCTATGACAAACAAATTATCATGATAAAAGCTGTAAATTATGACAAACAATATG
AACGTGTACATATGGGTAACTACACGCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54552.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis