Browse Element(s) Details


OsAffx.12909.1.S1_at

Description tigr:9631.m01780
TID=OsAffx.12909.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1810011/11hypothetical protein
LOC_Os04g585042/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18070Os.7985.1.S1_at11/113+10059323..10062418Omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed
LOC_Os03g18080Os.9593.1.S1_at10/113+10069246..10076848Transmembrane protein G5p, putative, expressed
LOC_Os03g18090NANA3+10079572..10079991hypothetical protein
LOC_Os03g18100OsAffx.12909.1.S1_at11/113+10081065..10081754hypothetical protein
LOC_Os03g18110Os.51761.1.S1_at11/113+10085032..10087065expressed protein
LOC_Os03g18120Os.57090.1.S1_at11/113+10095270..10099971expressed protein
LOC_Os03g18120OsAffx.27522.1.S1_x_at2/113+10095270..10099971expressed protein
LOC_Os03g18130Os.11327.1.S1_at11/113+10098996..10103435Asparagine synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12909.1.S1_at--646--4552Chr04:34576628..34576652 (25 bp)
GCGCCGGATGCGATTTGGGACTTCT
LOC_Os04g58504
OsAffx.12909.1.S1_at--114--3972Chr04:34576624..34576648 (25 bp)
CGGATGCGATTTGGGACTTCTCTTC
LOC_Os04g58504
OsAffx.12909.1.S1_at--547--591Chr03:10081677..10081701 (25 bp)
ATGCGATTTGGGACTTCTCTTCGGG
LOC_Os03g18100
OsAffx.12909.1.S1_at--1138--6511Chr03:10081673..10081697 (25 bp)
GATTTGGGACTTCTCTTCGGGCAGC
LOC_Os03g18100
OsAffx.12909.1.S1_at--347--10851Chr03:10081670..10081694 (25 bp)
TTGGGACTTCTCTTCGGGCAGCGGC
LOC_Os03g18100
OsAffx.12909.1.S1_at--852--2771Chr03:10081158..10081647 (25 bp)
AAGAGCCCGGCTAGGATTTATTATC
LOC_Os03g18100
OsAffx.12909.1.S1_at--89--4551Chr03:10081154..10081643 (25 bp)
GCCCGGCTAGGATTTATTATCCGAT
LOC_Os03g18100
OsAffx.12909.1.S1_at--1138--4851Chr03:10081149..10081638 (25 bp)
GCTAGGATTTATTATCCGATACCTT
LOC_Os03g18100
OsAffx.12909.1.S1_at--689--10411Chr03:10081138..10081162 (25 bp)
TTATCCGATACCTTATCAAAGAACA
LOC_Os03g18100
OsAffx.12909.1.S1_at--86--9831Chr03:10081102..10081126 (25 bp)
TAAAACTGAGAGTTAGCATGGCCTC
LOC_Os03g18100
OsAffx.12909.1.S1_at--1064--6011Chr03:10081095..10081119 (25 bp)
GAGAGTTAGCATGGCCTCTCATTTC
LOC_Os03g18100
Target Sequence 
GCGCCGGATGCGATTTGGGACTTCTCTTCGGGCAGCGGCGTGAGGAACAAATGACGGAGGAAAGAGCCCGGCTAGGATTT
ATTATCCGATACCTTATCAAAGAACAAAACAAGGAATTAAAACTGAGAGTTAGCATGGCCTCTCATTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12909.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis