Browse Element(s) Details


Os.11327.1.S1_at

Description gb:CB669073
DB_XREF= gi:29672798
DB_XREF=OSJNEe01E20.r
CLONE=OSJNEe01E20
TID=Os.11327.1
CNT=45
FEA=EST
TIER=Stack
STK=15
UG=Os.11327 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_201306.1 (A.thaliana) AAC72837.1) (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1813011/11Asparagine synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18080Os.9593.1.S1_at10/113+10069246..10076848Transmembrane protein G5p, putative, expressed
LOC_Os03g18090NANA3+10079572..10079991hypothetical protein
LOC_Os03g18100OsAffx.12909.1.S1_at11/113+10081065..10081754hypothetical protein
LOC_Os03g18110Os.51761.1.S1_at11/113+10085032..10087065expressed protein
LOC_Os03g18120Os.57090.1.S1_at11/113+10095270..10099971expressed protein
LOC_Os03g18120OsAffx.27522.1.S1_x_at2/113+10095270..10099971expressed protein
LOC_Os03g18130Os.11327.1.S1_at11/113+10098996..10103435Asparagine synthetase, putative, expressed
LOC_Os03g18140Os.8145.2.S1_at11/113+10127028..10132168expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006529biological_processasparagine biosynthesis
GO:0009063biological_processamino acid catabolism
GO:0009416biological_processresponse to light stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0004066molecular_functionasparagine synthase (glutamine-hydrolyzing) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11327.1.S1_at--815--2951Chr03:10099736..10099760 (25 bp)
AAGGCCAACGGCAACTGCGCGATGG
LOC_Os03g18130
Os.11327.1.S1_at--302--8171Chr03:10099650..10099674 (25 bp)
GGAAGCATAACGCTCGAAGCTGGCC
LOC_Os03g18130
Os.11327.1.S1_at--1040--31Chr03:10099613..10099637 (25 bp)
ATTGATCGCGCTAGCCGATGAGATC
LOC_Os03g18130
Os.11327.1.S1_at--1108--9351Chr03:10099587..10099611 (25 bp)
TCGACGGCCGTGTGGTGTACACTAA
LOC_Os03g18130
Os.11327.1.S1_at--769--7451Chr03:10099537..10099561 (25 bp)
GTGTGCGTGTTTTCTCACCAATCGC
LOC_Os03g18130
Os.11327.1.S1_at--1138--1871Chr03:10099507..10099531 (25 bp)
ACGTTGGCGCGTTCTGTAGTACTAC
LOC_Os03g18130
Os.11327.1.S1_at--780--6931Chr03:10099492..10099516 (25 bp)
GTAGTACTACCCGTGTACGTGCGTG
LOC_Os03g18130
Os.11327.1.S1_at--683--10251Chr03:10099467..10099491 (25 bp)
TTTGTTGCCGCTGCTGTTGTACCGT
LOC_Os03g18130
Os.11327.1.S1_at--1065--4171Chr03:10099439..10099463 (25 bp)
CCCTTGTCGTTGTACGTGTGCGAGA
LOC_Os03g18130
Os.11327.1.S1_at--15--7471Chr03:10099424..10099448 (25 bp)
GTGTGCGAGAGAGACCGATCCAAGT
LOC_Os03g18130
Os.11327.1.S1_at--58--9511Chr03:10099378..10099402 (25 bp)
TCATCCGAACTCATCCTTGAAACGA
LOC_Os03g18130
Target Sequence 
AAGGCCAACGGCAACTGCGCGATGGCGGCCAACGGGACGAACGGCGTCGGCCTGGTTGTGGCCAACGGGACAGCCAACGG
GAAGATGGAAGCATAACGCTCGAAGCTGGCCGNCCGGACGGCCATTGATCGCGCTAGCCGATGAGATCGTCGACGGCCGT
GTGGTGTACACTAAAAAAGGATAAAGCTAGTACTAGTANGTGTGCGTGTTTTCTCACCAATCGCCCATGACGTTGGCGCG
TTCTGTAGTACTACCCGTGTACGTGCGTGTTTGTTGCCGCTGCTGTTGTACCGTCTCCCCTTGTCGTTGTACGTGTGCGA
GAGAGACCGATCCAAGTATGTGGAGAGTGATCGATCACTCATCCGAACTCATCCTTGAAACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11327.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis