Browse Element(s) Details


Os.51761.1.S1_at

Description gb:AK063646.1
DB_XREF= gi:32973664
TID=Os.51761.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51761 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-H07, full insert sequence.
FL= gb:AK063646.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1811011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18070Os.7985.1.S1_at11/113+10059323..10062418Omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed
LOC_Os03g18080Os.9593.1.S1_at10/113+10069246..10076848Transmembrane protein G5p, putative, expressed
LOC_Os03g18090NANA3+10079572..10079991hypothetical protein
LOC_Os03g18100OsAffx.12909.1.S1_at11/113+10081065..10081754hypothetical protein
LOC_Os03g18110Os.51761.1.S1_at11/113+10085032..10087065expressed protein
LOC_Os03g18120Os.57090.1.S1_at11/113+10095270..10099971expressed protein
LOC_Os03g18120OsAffx.27522.1.S1_x_at2/113+10095270..10099971expressed protein
LOC_Os03g18130Os.11327.1.S1_at11/113+10098996..10103435Asparagine synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51761.1.S1_at--762--2011Chr03:10086460..10086480 (21 bp)
ACTACAGCTCGAAGGAGTGGGCCAA
LOC_Os03g18110
Os.51761.1.S1_at--498--3251Chr03:10086478..10086502 (25 bp)
CAACCCGGTGTCGAAGAACTGCTAC
LOC_Os03g18110
Os.51761.1.S1_at--787--8091Chr03:10086574..10086598 (25 bp)
GGACCAGGTGATACAGGCCACGCTG
LOC_Os03g18110
Os.51761.1.S1_at--36--9131Chr03:10086597..10086621 (25 bp)
TGCGGTCGATGAAGAGCCCCGTTCG
LOC_Os03g18110
Os.51761.1.S1_at--49--8151Chr03:10086763..10086787 (25 bp)
GGACACGTGGAACCAGCTCTTCTAT
LOC_Os03g18110
Os.51761.1.S1_at--1116--10131Chr03:10086785..10086809 (25 bp)
TATGCGCTTCTCTTCTACCAATAGC
LOC_Os03g18110
Os.51761.1.S1_at--848--4471Chr03:10086814..10086838 (25 bp)
GCCTGTAGGCAGTTAATTTCGTTTT
LOC_Os03g18110
Os.51761.1.S1_at--612--10151Chr03:10086845..10086869 (25 bp)
TATCGCTCGGTGTAACAATCTTCAG
LOC_Os03g18110
Os.51761.1.S1_at--476--6931Chr03:10086896..10086920 (25 bp)
GTAGGCACACATGGATGAGACTCTG
LOC_Os03g18110
Os.51761.1.S1_at--139--3611Chr03:10086939..10086963 (25 bp)
CATTGATTGATCATGCGCTGCCAAA
LOC_Os03g18110
Os.51761.1.S1_at--894--3331Chr03:10086980..10087004 (25 bp)
CACGGTTGTACTATGATCTGTCTGT
LOC_Os03g18110
Target Sequence 
ACTACAGCTCGAAGGAGTGGGCCAACCCGGTGTCGAAGAACTGCTACGGCGAGACGGCCCCGGCGGCGGCGGCGGCGGCG
GGGCTGAACGCGACGACGGCGCAGGCGACGTCGGGGCAGGACCAGGTGATACAGGCCACGCTGCGGTCGATGAAGAGCCC
CGTTCGCCTCCTCGACATCTCGGCGCTGTCGGCGCTGCGCAAGGACGCGCACCCGTCGGTGTACAGCGGCGACCTCTCGC
CGGCGCAGCGCGCCAACCCCGGCGGCGGCTCGGCGGACTGCAGCCACTGGTGCCTCCCCGGCCTGCCGGACACGTGGAAC
CAGCTCTTCTATGCGCTTCTCTTCTACCAATAGCTGTAGCCTGTAGGCAGTTAATTTCGTTTTTTTTTATATCGCTCGGT
GTAACAATCTTCAGAGTGAAGGTGAGGAGGCGTGGTGACAGTAGGCACACATGGATGAGACTCTGAGAAGAATCAAGAAT
GTACATTGATTGATCATGCGCTGCCAAATTGCAGTTGCAGTGTACACGGTTGTACTATGATCTGTCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51761.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis