Browse Element(s) Details


OsAffx.27522.1.S1_x_at

Description tigr:9634.m00848
TID=OsAffx.27522.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2024011/11retrotransposon protein, putative, unclassified
LOC_Os06g089707/11retrotransposon protein, putative, unclassified
LOC_Os11g064007/11retrotransposon protein, putative, unclassified
LOC_Os03g422705/11retrotransposon protein, putative, LINE subclass
LOC_Os09g359304/11hypothetical protein
LOC_Os10g169502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g330092/11
LOC_Os07g123602/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g331362/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g143402/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g181202/11expressed protein
LOC_Os01g310202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g231102/11hypothetical protein
LOC_Os07g262902/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g417102/11retrotransposon protein, putative, unclassified
LOC_Os08g279002/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g458301/11expressed protein
LOC_Os02g067501/11retrotransposon protein, putative, unclassified
LOC_Os01g416801/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20220OsAffx.26078.1.S1_at11/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220Os.16925.1.S1_at10/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220OsAffx.26078.1.S1_s_at9/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220Os.16925.1.S2_at9/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220Os.39411.1.A1_at2/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20230Os.20498.1.S1_at10/114+11265185..11269440Uncharacterised protein family containing protein, expressed
LOC_Os04g20230OsAffx.13883.1.S1_at8/114+11265185..11269440Uncharacterised protein family containing protein, expressed
LOC_Os04g20230OsAffx.573.1.S1_x_at1/114+11265185..11269440Uncharacterised protein family containing protein, expressed
LOC_Os04g20240OsAffx.27522.1.S1_x_at11/114+11272027..11273254retrotransposon protein, putative, unclassified
LOC_Os04g20240OsAffx.3613.1.S1_x_at1/114+11272027..11273254retrotransposon protein, putative, unclassified
LOC_Os04g20240OsAffx.3613.1.S1_at1/114+11272027..11273254retrotransposon protein, putative, unclassified
LOC_Os04g20249NANA4+11275990..11276633NA
LOC_Os04g20260OsAffx.13884.1.S1_at11/114+11284750..11286306UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g20270Os.2316.1.S1_a_at11/114+11291520..11303849Mono-ADP-ribosyltransferase sirtuin-6, putative, expressed
LOC_Os04g20270Os.40082.1.A1_x_at1/114+11291520..11303849Mono-ADP-ribosyltransferase sirtuin-6, putative, expressed
LOC_Os04g20270OsAffx.27348.1.A1_at1/114+11291520..11303849Mono-ADP-ribosyltransferase sirtuin-6, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27522.1.S1_x_at--786--5311Chr04:11273160..11273184 (25 bp)
GAAGTGGATCGAGACGGTGGGAATC
LOC_Os04g20240
OsAffx.27522.1.S1_x_at--854--5751Chr04:11273148..11273172 (25 bp)
GACGGTGGGAATCGCTGGCCGGAGA
LOC_Os04g20240
OsAffx.27522.1.S1_x_at--856--1311Chr04:11273118..11273142 (25 bp)
AGATGGTGGAGCTCACCTCACGTGG
LOC_Os04g20240
OsAffx.27522.1.S1_x_at--471--811Chr04:11273116..11273140 (25 bp)
ATGGTGGAGCTCACCTCACGTGGAG
LOC_Os04g20240
OsAffx.27522.1.S1_x_at--950--21391Chr12:9239530..9239554 (25 bp)
ACAGCATGGCACATGCGCTGGCACT
NONE
OsAffx.27522.1.S1_x_at--363--86128Chr11:10194357..10194381 (25 bp)
TGGTGCGCATGGCTGGTGTGGACCC
NONE
OsAffx.27522.1.S1_x_at--1130--34996Chr12:3136528..3136552 (25 bp)
CATGGCACATGCGCTGGCACTGGAC
NONE
OsAffx.27522.1.S1_x_at--1040--19325Chr12:12178938..12178962 (25 bp)
ACTGGACACACGGACGTGGCCAAGA
NONE
OsAffx.27522.1.S1_x_at--404--86518Chr12:9239510..9239534 (25 bp)
TGTGGACCCGGAGTGGTCACACAGC
NONE
OsAffx.27522.1.S1_x_at--542--80333Chr12:9239519..9239543 (25 bp)
GGAGTGGTCACACAGCATGGCACAT
NONE
OsAffx.27522.1.S1_x_at--126--11135Chr12:9239521..9239545 (25 bp)
AGTGGTCACACAGCATGGCACATGC
NONE
Target Sequence 
GAAGTGGATCGAGACGGTGGGAATCGCTGGCCGGAGAAGGGGAGATGGTGGAGCTCACCTCACGTGGAGGGGATGGGGTT
AGGAGGGTGCGAGGTATGGTGCNCATGNCTGGTGTGGACCNGGAGTGGTNACACAGCATGGCACATGCGCTGGCACTGGA
CACACGGACGTGNGNNCCNNGNNNGGGGNNNACNNNCNTGNGCNTGGNNGGTNTGNANCNACNCCNGNNNNNGTTNCGCA
GGCATGGTGCGCATGGCTGGTGTGGACCCGGAGTGGTCACANAGCATGGCACATGCGCTGGCACTGGACACACGGACGTG
GCCAAGAGGGGACGTTCCTGGCCTGGGGTTGANCGACGNNNNNNNNNNNNNNNNNNTGCGCATGGCTGGTGTGGACCCGG
AGTGGTCACACAGCATGGCACATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27522.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis