Browse Element(s) Details


Os.2316.1.S1_a_at

Description gb:AF159133.1
DB_XREF= gi:5353745
TID=Os.2316.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.2316 (NCBI UniGene Cluster)
DEF=Oryza sativa subsp. indica SIR2-like protein mRNA, complete cds.
PROD=SIR2-like protein
FL= gb:AF159133.1 gb:AK069000.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2027011/11Mono-ADP-ribosyltransferase sirtuin-6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20230Os.20498.1.S1_at10/114+11265185..11269440Uncharacterised protein family containing protein, expressed
LOC_Os04g20230OsAffx.13883.1.S1_at8/114+11265185..11269440Uncharacterised protein family containing protein, expressed
LOC_Os04g20230OsAffx.573.1.S1_x_at1/114+11265185..11269440Uncharacterised protein family containing protein, expressed
LOC_Os04g20240OsAffx.27522.1.S1_x_at11/114+11272027..11273254retrotransposon protein, putative, unclassified
LOC_Os04g20240OsAffx.3613.1.S1_x_at1/114+11272027..11273254retrotransposon protein, putative, unclassified
LOC_Os04g20240OsAffx.3613.1.S1_at1/114+11272027..11273254retrotransposon protein, putative, unclassified
LOC_Os04g20249NANA4+11275990..11276633NA
LOC_Os04g20260OsAffx.13884.1.S1_at11/114+11284750..11286306UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g20270Os.2316.1.S1_a_at11/114+11291520..11303849Mono-ADP-ribosyltransferase sirtuin-6, putative, expressed
LOC_Os04g20270Os.40082.1.A1_x_at1/114+11291520..11303849Mono-ADP-ribosyltransferase sirtuin-6, putative, expressed
LOC_Os04g20270OsAffx.27348.1.A1_at1/114+11291520..11303849Mono-ADP-ribosyltransferase sirtuin-6, putative, expressed
LOC_Os04g20280Os.12757.1.S1_a_at11/114+11310700..11314090protein tyrosine phosphatase, putative, expressed
LOC_Os04g20280Os.12757.4.S1_x_at1/114+11310700..11314090protein tyrosine phosphatase, putative, expressed
LOC_Os04g20290NANA4+11322177..11324620hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006342biological_processchromatin silencing
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005677cellular_componentchromatin silencing complex
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2316.1.S1_a_at--219--631Chr04:11292071..11292095 (25 bp)
ATGCTGCAGAGCATCGATCACGTGC
LOC_Os04g20270
Os.2316.1.S1_a_at--123--5031Chr04:11292048..11292072 (25 bp)
GCAGGGCAGCATGCAATTCTGGAGA
LOC_Os04g20270
Os.2316.1.S1_a_at--473--5551Chr04:11292003..11292027 (25 bp)
GAAACGTCAATTCATGCACTTGTGA
LOC_Os04g20270
Os.2316.1.S1_a_at--340--5851Chr04:11291980..11292004 (25 bp)
GACCAACATCGTCAGGTATGATACT
LOC_Os04g20270
Os.2316.1.S1_a_at--658--291Chr04:11291951..11291975 (25 bp)
ATAGCAAGGCGGCAGTTCCCATGGC
LOC_Os04g20270
Os.2316.1.S1_a_at--439--8271Chr04:11291941..11291965 (25 bp)
GGCAGTTCCCATGGCTACATGGATG
LOC_Os04g20270
Os.2316.1.S1_a_at--556--2571Chr04:11291910..11291934 (25 bp)
AACGGCAGCCTTTCGAAACGGCATA
LOC_Os04g20270
Os.2316.1.S1_a_at--263--10111Chr04:11291887..11291911 (25 bp)
TATGGATGCCATTGGTTGCAACCCA
LOC_Os04g20270
Os.2316.1.S1_a_at--1103--7891Chr04:11291874..11291898 (25 bp)
GGTTGCAACCCAGCATCGTCAAAAA
LOC_Os04g20270
Os.2316.1.S1_a_at--247--3271Chr04:11291706..11291730 (25 bp)
CAACTTCTAGTGCATGTGAAAGCTG
LOC_Os04g20270
Os.2316.1.S1_a_at--658--2671Chr04:11291663..11291687 (25 bp)
AAGCCCAACGTAATTCAGCAACCAT
LOC_Os04g20270
Target Sequence 
ATGCTGCAGAGCATCGATCACGTGCAGGGCAGCATGCAATTCTGGAGAGGGAGGGTGTGCCAAGAGNTGAAACGTCAATT
CATGCACTTGTGACCAACATCGTCAGGTATGATACTGAAGATAGCAAGGCGGCAGTTCCCATGGCTACATGGATGANCAG
CAACGGCAGCCTTTCGAAACGGCATATGGATGCCATTGGTTGCAACCCAGCATCGTCAAAAAAGCAGAAGTTGGTTGCTA
NTCGTCATCGGCGAAAGGGCTTGANCCCTGCTACTCAGAAAGTTTGATGGCTGTTTGTTNTAGTTGTCAGACTAGAGTTA
GGATAGATGCATGAGATGTTCNCAGTAGNTAGAGTAAGGTGTTANCAACTTCTAGTGCATGTGAAAGCTGGTAGAATTTT
AACTTGNCAAGCCCAACGTAATTCAGCAACCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2316.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis