Browse Element(s) Details


OsAffx.13883.1.S1_at

Description tigr:9632.m01848
TID=OsAffx.13883.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g202308/11Uncharacterised protein family containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20210Os.50289.1.S1_at11/114+11239821..11246802expressed protein
LOC_Os04g20220OsAffx.26078.1.S1_at11/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220Os.16925.1.S1_at10/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220OsAffx.26078.1.S1_s_at9/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220Os.16925.1.S2_at9/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220Os.39411.1.A1_at2/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20230Os.20498.1.S1_at10/114+11265185..11269440Uncharacterised protein family containing protein, expressed
LOC_Os04g20230OsAffx.13883.1.S1_at8/114+11265185..11269440Uncharacterised protein family containing protein, expressed
LOC_Os04g20230OsAffx.573.1.S1_x_at1/114+11265185..11269440Uncharacterised protein family containing protein, expressed
LOC_Os04g20240OsAffx.27522.1.S1_x_at11/114+11272027..11273254retrotransposon protein, putative, unclassified
LOC_Os04g20240OsAffx.3613.1.S1_x_at1/114+11272027..11273254retrotransposon protein, putative, unclassified
LOC_Os04g20240OsAffx.3613.1.S1_at1/114+11272027..11273254retrotransposon protein, putative, unclassified
LOC_Os04g20249NANA4+11275990..11276633NA
LOC_Os04g20260OsAffx.13884.1.S1_at11/114+11284750..11286306UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g20270Os.2316.1.S1_a_at11/114+11291520..11303849Mono-ADP-ribosyltransferase sirtuin-6, putative, expressed
LOC_Os04g20270Os.40082.1.A1_x_at1/114+11291520..11303849Mono-ADP-ribosyltransferase sirtuin-6, putative, expressed
LOC_Os04g20270OsAffx.27348.1.A1_at1/114+11291520..11303849Mono-ADP-ribosyltransferase sirtuin-6, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13883.1.S1_at--12--5871NONE
GAGCCAGTCGTTCAGAAAATTCAAC
NONE
OsAffx.13883.1.S1_at--1135--231NONE
ATATCTGCAAAAAGGCACACCCTCC
NONE
OsAffx.13883.1.S1_at--974--2151Chr04:11267544..11267568 (25 bp)
ACACCATGGCATCCAGGCGATGAGG
LOC_Os04g20230
OsAffx.13883.1.S1_at--456--6151Chr04:11267523..11267547 (25 bp)
GAGGTCCAGGGCCTTGTCCAGCCAT
LOC_Os04g20230
OsAffx.13883.1.S1_at--674--4411Chr04:11267503..11267527 (25 bp)
GCCATCCAACACTGAACTTTTAATT
LOC_Os04g20230
OsAffx.13883.1.S1_at--1075--8971Chr04:11267491..11267515 (25 bp)
TGAACTTTTAATTGGCAGGCCATAT
LOC_Os04g20230
OsAffx.13883.1.S1_at--876--8431Chr04:11267474..11267498 (25 bp)
GGCCATATTTAGTACTTATCTCAGC
LOC_Os04g20230
OsAffx.13883.1.S1_at--704--451Chr04:11267457..11267481 (25 bp)
ATCTCAGCAATGGAGTTCTCAAGCT
LOC_Os04g20230
OsAffx.13883.1.S1_at--909--8011Chr04:11266789..11266808 (20 bp)
GGAGGAGCTCTGACAATATTAGATC
LOC_Os04g20230
OsAffx.13883.1.S1_at--759--1271NONE
AGATCTTTCATGCTATACACTAGGG
NONE
OsAffx.13883.1.S1_at--1002--3292Chr07:27168882..27168903 (22 bp)
CAAATTTGTAGTAGCATCAACCACT
NONE
Target Sequence 
GAGCCAGTCGTTCAGAAAATTCAACTGCCAAACATTAGTTTGCACAGTGATATCTGCAAAAAGGCACACCCTCCTGGCCC
TTGTTCCACACCATGGCATCCAGGCGATGAGGTCCAGGGCCTTGTCCAGCCATCCAACACTGAACTTTTAATTGGCAGGC
CATATTTAGTACTTATCTCAGCAATGGAGTTCTCAAGCTTTAGACAGATAGAGGAGAGGAGGAGCTCTGACAATATTAGA
TCTTTCATGCTATACACTAGGGATTCATCAAAAAGCTGGCGTCAGGCTGGATCAGATGGAAGTAGTCAGCTGACTTTAAA
AGAACCATCAACCAATATGGTCTTAGCCGATCATGTTACAACGAAGAAATGGCAGCAAGTTGTTGATTTCGATGACCACC
TCGATGATATTAGCAAATTTGTAGTAGCATCAACCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13883.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis