Browse Element(s) Details


Os.50289.1.S1_at

Description gb:AK120550.1
DB_XREF= gi:37990173
TID=Os.50289.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50289 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013130B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013130B09, full insert sequence.
FL= gb:AK120550.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2021011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20164Os.11835.4.S1_x_at11/114+11211740..11219275Copper amine oxidase, enzyme domain containing protein, expressed
LOC_Os04g20164Os.11835.3.S1_x_at11/114+11211740..11219275Copper amine oxidase, enzyme domain containing protein, expressed
LOC_Os04g20180OsAffx.26077.1.S1_at11/114+11222511..11226645GDSL-like Lipase/Acylhydrolase family protein
LOC_Os04g20180Os.7905.1.S1_at1/114+11222511..11226645GDSL-like Lipase/Acylhydrolase family protein
LOC_Os04g20180OsAffx.30455.1.S1_at1/114+11222511..11226645GDSL-like Lipase/Acylhydrolase family protein
LOC_Os04g20189NANA4+11228900..11229157NA
LOC_Os04g20200OsAffx.3833.1.S1_at11/114+11233340..11236710hypothetical protein
LOC_Os04g20200Os.25466.1.S1_at4/114+11233340..11236710hypothetical protein
LOC_Os04g20200Os.25340.1.A1_at4/114+11233340..11236710hypothetical protein
LOC_Os04g20210Os.50289.1.S1_at11/114+11239821..11246802expressed protein
LOC_Os04g20220OsAffx.26078.1.S1_at11/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220Os.16925.1.S1_at10/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220OsAffx.26078.1.S1_s_at9/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220Os.16925.1.S2_at9/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220Os.39411.1.A1_at2/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20230Os.20498.1.S1_at10/114+11265185..11269440Uncharacterised protein family containing protein, expressed
LOC_Os04g20230OsAffx.13883.1.S1_at8/114+11265185..11269440Uncharacterised protein family containing protein, expressed
LOC_Os04g20230OsAffx.573.1.S1_x_at1/114+11265185..11269440Uncharacterised protein family containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50289.1.S1_at--839--7811Chr04:11240760..11240784 (25 bp)
GGTCTTTTCTAATTTGTGCATGCTT
LOC_Os04g20210
Os.50289.1.S1_at--945--9031Chr04:11240740..11240764 (25 bp)
TGCTTTGATTTTGTGGGTCCCTAAC
LOC_Os04g20210
Os.50289.1.S1_at--330--8551Chr04:11240688..11240712 (25 bp)
TGGAGCATGTCAAGACCATCCCGGC
LOC_Os04g20210
Os.50289.1.S1_at--26--4791Chr04:11240659..11240682 (24 bp)
GCTGCCTTCATCTCAGACTGACTGA
LOC_Os04g20210
Os.50289.1.S1_at--433--2191Chr04:11240179..11240203 (25 bp)
ACACAAGCTCTTGTTGCTGAATGAC
LOC_Os04g20210
Os.50289.1.S1_at--815--8631Chr04:11240150..11240174 (25 bp)
TGGGACCTACTGACAATCCTTTTGT
LOC_Os04g20210
Os.50289.1.S1_at--123--6911Chr04:11240105..11240129 (25 bp)
GTATCTGGACATGGTTGGTTCTTCA
LOC_Os04g20210
Os.50289.1.S1_at--629--10591Chr04:11240078..11240102 (25 bp)
TTCTGGAAACTTGATCCTCACCTTT
LOC_Os04g20210
Os.50289.1.S1_at--1066--10311Chr04:11240040..11240064 (25 bp)
TTTCTTTCTATCTCCATCATTTTCA
LOC_Os04g20210
Os.50289.1.S1_at--153--5391Chr04:11239928..11239952 (25 bp)
GAAGCACAGCATGCCACACAGGGAT
LOC_Os04g20210
Os.50289.1.S1_at--1078--7491Chr04:11239834..11239858 (25 bp)
GTGGTGCTACCATTTATCTATAAAC
LOC_Os04g20210
Target Sequence 
GGTCTTTTCTAATTTGTGCATGCTTTGATTTTGTGGGTCCCTAACAAAACATAATATTGGGCAAAAGCCAGCTGGAGCAT
GTCAAGACCATCCCGGCCCTCGGCTGCCTTCATCTCAGACTGACTGAAAGCACGAATTGTTTCCATAAGTGAAAGGAAAG
AATTTGATCTAGACACAAGCTCTTGTTGCTGAATGACAAATTGGGACCTACTGACAATCCTTTTGTCAAGTACTTATGTT
ACTCATGTATCTGGACATGGTTGGTTCTTCAGTTTCTGGAAACTTGATCCTCACCTTTCCACCTCTAGCCCTTTCTTTCT
ATCTCCATCATTTTCATTTGTTAGATCAACTGGATTAAGGTAGACAGTTGAAATAGTGAAGCAGTGGTGGTTCACGAAAA
CTGAAAAGTTGTGGGTGATGGAGGAAGCACAGCATGCCACACAGGGATCTCTATCTCTCTCTAGAGTTTAATTGATTCAT
CTTTATTCTAGACTTCAATTTTCTTAAAGATTAAAGAGTGGTGCTACCATTTATCTATAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50289.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis