Browse Element(s) Details


Os.25340.1.A1_at

Description gb:AK072856.1
DB_XREF= gi:32982879
TID=Os.25340.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25340 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023135F23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023135F23, full insert sequence.
FL= gb:AK072856.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g202004/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20164Os.11835.4.S1_x_at11/114+11211740..11219275Copper amine oxidase, enzyme domain containing protein, expressed
LOC_Os04g20164Os.11835.3.S1_x_at11/114+11211740..11219275Copper amine oxidase, enzyme domain containing protein, expressed
LOC_Os04g20180OsAffx.26077.1.S1_at11/114+11222511..11226645GDSL-like Lipase/Acylhydrolase family protein
LOC_Os04g20180Os.7905.1.S1_at1/114+11222511..11226645GDSL-like Lipase/Acylhydrolase family protein
LOC_Os04g20180OsAffx.30455.1.S1_at1/114+11222511..11226645GDSL-like Lipase/Acylhydrolase family protein
LOC_Os04g20189NANA4+11228900..11229157NA
LOC_Os04g20200OsAffx.3833.1.S1_at11/114+11233340..11236710hypothetical protein
LOC_Os04g20200Os.25466.1.S1_at4/114+11233340..11236710hypothetical protein
LOC_Os04g20200Os.25340.1.A1_at4/114+11233340..11236710hypothetical protein
LOC_Os04g20210Os.50289.1.S1_at11/114+11239821..11246802expressed protein
LOC_Os04g20220OsAffx.26078.1.S1_at11/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220Os.16925.1.S1_at10/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220OsAffx.26078.1.S1_s_at9/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220Os.16925.1.S2_at9/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220Os.39411.1.A1_at2/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25340.1.A1_at--666--6272Chr06:13282911..13282935 (25 bp)
GATGTTTATATCACAGGCTTGGTGT
NONE
Os.25340.1.A1_at--116--3491Chr06:13282924..13282948 (25 bp)
CAGGCTTGGTGTTTACTGGGTACTT
NONE
Os.25340.1.A1_at--509--3872Chr06:13282939..13282963 (25 bp)
CTGGGTACTTGATGCTGGAAAACAT
NONE
Os.25340.1.A1_at--591--7751Chr06:13283032..13283056 (25 bp)
GGTGAATTTCCTGATTACTAATAAC
NONE
Os.25340.1.A1_at--242--10111Chr06:13283062..13283086 (25 bp)
TATGGCTTCATTTATTTGTCGGAGC
NONE
Os.25340.1.A1_at--1140--10171Chr06:13283074..13283098 (25 bp)
TATTTGTCGGAGCTAACTGGGTTTG
NONE
Os.25340.1.A1_at--39--2951Chr06:13283283..13283307 (25 bp)
AAGGCCTTCGTTGTTTGCTGCAGAT
NONE
Os.25340.1.A1_at--959--9111Chr06:13283298..13283322 (25 bp)
TGCTGCAGATAGACCAAACATGATT
NONE
Os.25340.1.A1_at--1072--7911Chr06:13283342..13283366 (25 bp)
GGTTGTGGGAGAACATTCATCTTTA
NONE
Os.25340.1.A1_at--243--7033Chr08:12832042..12832066 (25 bp)
GTACATGAAATTGCAATTCCTTTTA
NONE
Os.25340.1.A1_at--409--772Chr06:13283444..13283468 (25 bp)
ATGTCGTGCATTTGCAACTTTGTTA
NONE
Target Sequence 
GATGTTTATATCACAGGCTTGGTGTTTACTGGGTACTTGATGCTGGAAAACATTTATGACTTTATATATACTTCCTCAAA
CAATTTAAGATTCTCTTTCTTGATTTGTTTCTGCATGTAATGGTGAATTTCCTGATTACTAATAACTGTCATATGGCTTC
ATTTATTTGTCGGAGCTAACTGGGTTTGATTATTTGTGATCACCTTAAGTGTTGCTGCTTAAGCCAAAGGAAGAGGAAAA
ACTTTTATATAAGCATTTCATTTNATACAGGTTCCCTCATATTTTNTAGGTACCATTGCCACTNTAGAAAAGATTGGAAG
GCCTTNTAGGCATCATTGATACTCCTGTCCAAAAGGTGTTTGACGAATTTGGAAGGCCTTCGTTGTTTGCTGCAGATAGA
CCAAACATGATTGCTTGAACAAAAAATAGATGGTTGTGGGAGAACATTCATCTTTACATTCTTTAGCTTTCCCTATTTTN
TTAGNATNTTGTAGTACATGAAATTGCAATTCCTTTTACTTACTAGAAAGTAAATGTCGTGCATTTGCAACTTTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25340.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis