Browse Element(s) Details


Os.7905.1.S1_at

Description gb:AK061229.1
DB_XREF= gi:32971247
TID=Os.7905.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.7905 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0038J17.19 (OSJNBa0038J17.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-211-A03, full insert sequence.
FL= gb:AK061229.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1157011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g034902/11GDSL-motif lipase/hydrolase family protein, putative
LOC_Os04g201801/11GDSL-like Lipase/Acylhydrolase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11550Os.2066.1.S1_a_at11/111+6218442..6221131TCP family transcription factor containing protein, expressed
LOC_Os01g11550Os.2066.2.S1_x_at11/111+6218442..6221131TCP family transcription factor containing protein, expressed
LOC_Os01g11570Os.7905.1.S1_at11/111+6239311..6241681GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11570OsAffx.26077.1.S1_at5/111+6239311..6241681GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11580Os.37125.2.S1_x_at11/111+6244899..6250200DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os01g11580OsAffx.23202.1.S1_x_at11/111+6244899..6250200DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os01g11590Os.18774.1.S1_s_at11/111+6250523..62540003-oxoacyl-synthase, putative, expressed
LOC_Os01g11590Os.43493.1.S1_at2/111+6250523..62540003-oxoacyl-synthase, putative, expressed
LOC_Os01g11600NANA1+6254717..6255066hypothetical protein
LOC_Os01g11609NANA1+6258125..6258316NA
LOC_Os01g11620Os.43491.1.S1_x_at11/111+6264242..6267574GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7905.1.S1_at--1115--5933Chr09:1720565..1720589 (25 bp)
GAGCAATGGCCCTCCACTAAAATTA
LOC_Os09g03490
Os.7905.1.S1_at--657--9812Chr09:1720582..1720606 (25 bp)
TAAAATTATACTCATCACGCCTCCA
LOC_Os09g03490
Os.7905.1.S1_at--1103--3771Chr01:6241010..6241034 (25 bp)
CTCCACCAATCTATGAACCGGCGAG
LOC_Os01g11570
Os.7905.1.S1_at--305--9031Chr01:6239639..6239663 (25 bp)
TGCACTTCACCCCATTGGGAAACAA
LOC_Os01g11570
Os.7905.1.S1_at--838--3131Chr01:6239614..6239638 (25 bp)
AATTTTGTTTGACTGTGTGCTGGAG
LOC_Os01g11570
Os.7905.1.S1_at--218--4391Chr01:6239567..6239591 (25 bp)
GCCAAGGGAGTCTTCAACCAGATCT
LOC_Os01g11570
Os.7905.1.S1_at--550--8811Chr01:6239530..6239554 (25 bp)
TGATATCGACCCAAAGGACCCTTTG
LOC_Os01g11570
Os.7905.1.S1_at--86--3051Chr01:6239494..6239518 (25 bp)
AATCTGAAGAAGGTCCCGGCCGGCA
LOC_Os01g11570
Os.7905.1.S1_at--584--3931Chr01:6239474..6239498 (25 bp)
CGGCATGGTTTGTTCAGGCACGGAT
LOC_Os01g11570
Os.7905.1.S1_at--639--931Chr01:6239459..6239483 (25 bp)
AGGCACGGATACTCGTTGTAACAGG
LOC_Os01g11570
Os.7905.1.S1_at--139--2491Chr01:6239440..6239464 (25 bp)
AACAGGGACACCTTATGCCATCGTG
LOC_Os01g11570
Target Sequence 
GAGCAATGGCCCTCCACTAAAATTATACTCATCACGCCTCCACCAATCTATGAACCGGCGAGAATCCGGGACATGTATGG
AGAAGATGACCCTTCAAAACTACCTGAAAGAACCAATGAAGCTGCTGGCACTTATGCACAGGCATGCCTGACAGTTGCTA
AAGAATTGAACCATCCAGTCATAGACATCTGGACAAAGATGCAGCAATTTCCTGACTGGCAAACATCTGCATTATGTGAT
GGACTGCACTTCACCCCATTGGGAAACAAAATTTTGTTTGACTGTGTGCTGGAGACACTGGAAAGCATTGGTTTCAGCCA
AGGGAGTCTTCAACCAGATCTTCCTCTCTTCCATGATATCGACCCAAAGGACCCTTTGAAAGCCTTTGAAATCTGAAGAA
GGTCCCGGCCGGCATGGTTTGTTCAGGCACGGATACTCGTTGTAACAGGGACACCTTATGCCATCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7905.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis