Browse Element(s) Details


Os.43491.1.S1_x_at

Description gb:CA763435
DB_XREF= gi:25807474
DB_XREF=BR060006B10H10.ab1
CLONE=BR060006B10H10.ab1
TID=Os.43491.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.43491 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0038J17.23 (OSJNBa0038J17.23), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1162011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11570Os.7905.1.S1_at11/111+6239311..6241681GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11570OsAffx.26077.1.S1_at5/111+6239311..6241681GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11580Os.37125.2.S1_x_at11/111+6244899..6250200DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os01g11580OsAffx.23202.1.S1_x_at11/111+6244899..6250200DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os01g11590Os.18774.1.S1_s_at11/111+6250523..62540003-oxoacyl-synthase, putative, expressed
LOC_Os01g11590Os.43493.1.S1_at2/111+6250523..62540003-oxoacyl-synthase, putative, expressed
LOC_Os01g11600NANA1+6254717..6255066hypothetical protein
LOC_Os01g11609NANA1+6258125..6258316NA
LOC_Os01g11620Os.43491.1.S1_x_at11/111+6264242..6267574GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11629NANA1+6272410..6272696NA
LOC_Os01g11640OsAffx.11011.1.S1_at11/111+6274280..6274516hypothetical protein
LOC_Os01g11650Os.3850.3.S1_at11/111+6275322..6280450GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11650Os.3850.1.S1_a_at11/111+6275322..6280450GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11650Os.54974.1.S1_x_at1/111+6275322..6280450GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11660Os.33387.1.S1_at11/111+6285167..6289103GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43491.1.S1_x_at--636--4091Chr01:6265342..6265366 (25 bp)
CGACGACTACGACGGCAATGGCTGC
LOC_Os01g11620
Os.43491.1.S1_x_at--568--2951Chr01:6265358..6265382 (25 bp)
AATGGCTGCCTCAAGAGCTACAACT
LOC_Os01g11620
Os.43491.1.S1_x_at--191--751Chr01:6265460..6265484 (25 bp)
ATGTACGGCAACTTCTACGACCAGG
LOC_Os01g11620
Os.43491.1.S1_x_at--951--5811Chr01:6265478..6265502 (25 bp)
GACCAGGTCACCCAGATGGTTCAGT
LOC_Os01g11620
Os.43491.1.S1_x_at--406--1311Chr01:6265491..6265515 (25 bp)
AGATGGTTCAGTCTCCCGGGAGTTT
LOC_Os01g11620
Os.43491.1.S1_x_at--350--8231Chr01:6267152..6267176 (25 bp)
GGCAAGGCTCCTACAACTACAATAA
LOC_Os01g11620
Os.43491.1.S1_x_at--591--2851Chr01:6267204..6267228 (25 bp)
AAGTGCCTGTGGAGACCCGGAGAAT
LOC_Os01g11620
Os.43491.1.S1_x_at--684--131Chr01:6267227..6267251 (25 bp)
ATTACTTGGTCTGGGATGGCATTCA
LOC_Os01g11620
Os.43491.1.S1_x_at--578--10631Chr01:6267273..6267297 (25 bp)
TTCGATCGCGGATGGATGGCTCAGC
LOC_Os01g11620
Os.43491.1.S1_x_at--1081--8751Chr01:6267307..6267331 (25 bp)
TGTAGCCCAGCTATTCTGCACTGAG
LOC_Os01g11620
Os.43491.1.S1_x_at--829--3391Chr01:6267342..6267366 (25 bp)
CAGCTGGGCTATTTTCATGTTCGTA
LOC_Os01g11620
Target Sequence 
CGACGACTACGACGGCAATGGCTGCCTCAAGAGCTACAACTCCCTCTCCGTCTACCACANCGGCCTGCTCAAGCAGGGGC
TCGCCGGCGTCCAGGCCAAGTACCCGGCCGTCCGCCTCATGTACGGCAACTTCTACGACCAGGTCACCCAGATGGTTCAG
TCTCCCGGGAGTTTCGGGCTACAATATGGCCTGAAAGTGTGNTGCGGCGCCGGTGGGCAAGGCTCCTACAACTACAATAA
CAAGGCGAGGTGTGGCATGTCAGGGGCAAGTGCCTGTGGAGACCCGGAGAATTACTTGGTCTGGGATGGCATTCACCTCA
CCGAGGCTGCCTACCGTTCGATCGCGGATGGATGGCTCAGCGGGCCATACTGTAGCCCAGCTATTCTGCACTGAGCTGCA
GCCTGCAGCTGGGCTATTTTCATGTTCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43491.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis