Browse Element(s) Details


Os.37125.2.S1_x_at

Description gb:NM_188433.1
DB_XREF= gi:34903949
GEN=OSJNBa0038J17.20
TID=Os.37125.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.37125 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative PSTVd RNA-biding protein (OSJNBa0038J17.20), mRNA.
PROD=putative PSTVd RNA-biding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1158011/11DNA-binding bromodomain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11550Os.2066.1.S1_a_at11/111+6218442..6221131TCP family transcription factor containing protein, expressed
LOC_Os01g11550Os.2066.2.S1_x_at11/111+6218442..6221131TCP family transcription factor containing protein, expressed
LOC_Os01g11570Os.7905.1.S1_at11/111+6239311..6241681GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11570OsAffx.26077.1.S1_at5/111+6239311..6241681GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11580Os.37125.2.S1_x_at11/111+6244899..6250200DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os01g11580OsAffx.23202.1.S1_x_at11/111+6244899..6250200DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os01g11590Os.18774.1.S1_s_at11/111+6250523..62540003-oxoacyl-synthase, putative, expressed
LOC_Os01g11590Os.43493.1.S1_at2/111+6250523..62540003-oxoacyl-synthase, putative, expressed
LOC_Os01g11600NANA1+6254717..6255066hypothetical protein
LOC_Os01g11609NANA1+6258125..6258316NA
LOC_Os01g11620Os.43491.1.S1_x_at11/111+6264242..6267574GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11629NANA1+6272410..6272696NA
LOC_Os01g11640OsAffx.11011.1.S1_at11/111+6274280..6274516hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37125.2.S1_x_at--509--5071Chr01:6245022..6245046 (25 bp)
GCAGCGGCTTAGTAATAATCTCCAG
LOC_Os01g11580
Os.37125.2.S1_x_at--518--9751Chr01:6245037..6245061 (25 bp)
TAATCTCCAGGAGTTGCCACCAGAG
LOC_Os01g11580
Os.37125.2.S1_x_at--223--1431Chr01:6245095..6245119 (25 bp)
AGAAACTTGTCACTCAGCCAGCATG
LOC_Os01g11580
Os.37125.2.S1_x_at--1037--7631Chr01:6245168..6245192 (25 bp)
GGGAGCTCGATAGGTTTGTTACAAA
LOC_Os01g11580
Os.37125.2.S1_x_at--914--5011Chr01:6245313..6245337 (25 bp)
GCAGGATCAGATGCCTCCAGTACAA
LOC_Os01g11580
Os.37125.2.S1_x_at--755--5991Chr01:6245426..6245445 (20 bp)
GAGACGTTACATAATCCTGAGCCAG
LOC_Os01g11580
Os.37125.2.S1_x_at--712--5211Chr01:6245445..6245469 (25 bp)
GAATCAATTGATATCGAACCACCTA
LOC_Os01g11580
Os.37125.2.S1_x_at--226--2471Chr01:6245475..6245784 (25 bp)
AACACAGCAGCATTTCTGTTTGCAA
LOC_Os01g11580
Os.37125.2.S1_x_at--783--4951Chr01:6245769..6245793 (25 bp)
GCATTTCTGTTTGCAATTAACTCTA
LOC_Os01g11580
Os.37125.2.S1_x_at--1022--171Chr01:6245832..6245856 (25 bp)
ATTTACCGTGAGAAGCATATGCAGA
LOC_Os01g11580
Os.37125.2.S1_x_at--754--1311Chr01:6245881..6245905 (25 bp)
AGATGGCTCTGATGCTGCACAGTCA
LOC_Os01g11580
Target Sequence 
GCAGCGGCTTAGTAATAATCTCCAGGAGTTGCCACCAGAGAAACTTGACAATGTTGTGCAGATTATAAAGAAGAGAAACT
TGTCACTCAGCCAGCATGATGATGAGATTGAGGTTGATATAGATAGCTTTGATGTTGAGACATTATGGGAGCTCGATAGG
TTTGTTACAAACTACAAAAAAAGTATAAGCAAGAACAAGCGGAAGGCTGAGAATCCCGTGGCAGGGCAGGATGAGATGAA
TCATGATATAGAGCTAGAGAAGACAGAGCATGCAAGGTTGGATGAAGTAGAGCAGGATCAGATGCCTCCAGTACAAGAGA
CGTTACATAATCCTGAGCCAGAATCAATTGATATCGAACCACCTAAAGAAAACACAGCAGCATTTCTGTTTGCAATTAAC
TCTATAAAGGATATTTTCATATACATCTGCATAACATATGAAATTTACCGTGAGAAGCATATGCAGATACAGACACAGAT
AGTTCATCAGCAGATGGCTCTGATGCTGCACAGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37125.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis