Browse Element(s) Details


Os.18774.1.S1_s_at

Description gb:CB659772
DB_XREF= gi:29663497
DB_XREF=OSJNEd01A09.r
CLONE=OSJNEd01A09
TID=Os.18774.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.18774 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_172114.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1159011/113-oxoacyl-synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11570Os.7905.1.S1_at11/111+6239311..6241681GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11570OsAffx.26077.1.S1_at5/111+6239311..6241681GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11580Os.37125.2.S1_x_at11/111+6244899..6250200DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os01g11580OsAffx.23202.1.S1_x_at11/111+6244899..6250200DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os01g11590Os.18774.1.S1_s_at11/111+6250523..62540003-oxoacyl-synthase, putative, expressed
LOC_Os01g11590Os.43493.1.S1_at2/111+6250523..62540003-oxoacyl-synthase, putative, expressed
LOC_Os01g11600NANA1+6254717..6255066hypothetical protein
LOC_Os01g11609NANA1+6258125..6258316NA
LOC_Os01g11620Os.43491.1.S1_x_at11/111+6264242..6267574GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11629NANA1+6272410..6272696NA
LOC_Os01g11640OsAffx.11011.1.S1_at11/111+6274280..6274516hypothetical protein
LOC_Os01g11650Os.3850.3.S1_at11/111+6275322..6280450GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11650Os.3850.1.S1_a_at11/111+6275322..6280450GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11650Os.54974.1.S1_x_at1/111+6275322..6280450GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18774.1.S1_s_at--955--5911Chr01:6253420..6253443 (24 bp)
GAGCTTTGCCAAATTGCTGCACGAT
LOC_Os01g11590
Os.18774.1.S1_s_at--302--5091Chr01:6253437..6253461 (25 bp)
GCACGATAAGTGAAGCGCCAACCAT
LOC_Os01g11590
Os.18774.1.S1_s_at--691--2491Chr01:6253474..6253498 (25 bp)
AACAGTACTCCAGCCAACATGAATC
LOC_Os01g11590
Os.18774.1.S1_s_at--335--5251Chr01:6253494..6253518 (25 bp)
GAATCAGCTCGAGCGTTGAGGCTTT
LOC_Os01g11590
Os.18774.1.S1_s_at--619--2371Chr01:6253574..6253598 (25 bp)
AAACGGTGCCAACCTGCAAAAGTAT
LOC_Os01g11590
Os.18774.1.S1_s_at--315--7691Chr01:6253627..6253651 (25 bp)
GGGTACCAAACATTTCAGCCTATGT
LOC_Os01g11590
Os.18774.1.S1_s_at--21--9671Chr01:6253641..6253665 (25 bp)
TCAGCCTATGTAATGCACCTGCCAA
LOC_Os01g11590
Os.18774.1.S1_s_at--194--2211Chr01:6253668..6253692 (25 bp)
ACAACGAGCGTCACTATCGGCCGTG
LOC_Os01g11590
Os.18774.1.S1_s_at--536--5731Chr01:6253692..6253716 (25 bp)
GACGGCTGGTTTTTACTTCCAGGAG
LOC_Os01g11590
Os.18774.1.S1_s_at--302--7931Chr01:6253864..6253888 (25 bp)
GGATTCAGGTAGTACTCCTTCCATC
LOC_Os01g11590
Os.18774.1.S1_s_at--1001--5931Chr01:6253940..6253964 (25 bp)
GAGCAGTTGCTAACCAGTGTACGTT
LOC_Os01g11590
Target Sequence 
GAGCTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCAAAACAGTACTCCAGCCAACATGAATC
AGCTCGAGCGTTGAGGCTTTGCCGCTGGGAGGCGGGAAAGTTTCTCCGAGGGAGATGCTAAGAGCGTCAAGTAAAAAACG
GTGCCAACCTGCAAAAGTATATTGAATCATCAAGACTAATATGTAATGGGGTACCAAACATTTCAGCCTATGTAATGCAC
CTGCCAACGACAACGAGCGTCACTATCGGCCGTGACGGCTGGTTTTTACTTCCAGGAGGAGTAATCGTGCCCAGATGTCC
GATCCTGTATCGTCCAGAATGCTTCTTCCATCCTAATCACCGCATTCCAGTACTATCCATAATCCAAAACCTCTCTCCTG
CTCCGATTGCGTATTATCAAAAACGGAAGAGATCAATCAGAGTTTGGATTCAGGTAGTACTCCTTCCATCTCAATATAAA
TATAACCTAATGTAGATATAACATTTATATTGAGACGGAAAGAGCAGTTGCTAACCAGTGTACGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18774.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis