Browse Element(s) Details


Os.2066.2.S1_x_at

Description gb:NM_188429.1
DB_XREF= gi:34903941
GEN=OSJNBa0038J17.16
TID=Os.2066.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.2066 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative TCP3 (OSJNBa0038J17.16), mRNA.
PROD=putative TCP3
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1155011/11TCP family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11520Os.7731.1.S1_at11/111+6195960..6197201Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g11530OsAffx.10261.2.A1_at11/111+6205940..6207490hypothetical protein
LOC_Os01g11530Os.10626.4.A1_s_at11/111+6205940..6207490hypothetical protein
LOC_Os01g11530OsAffx.31752.1.S1_at2/111+6205940..6207490hypothetical protein
LOC_Os01g11530Os.40531.1.A1_x_at1/111+6205940..6207490hypothetical protein
LOC_Os01g11550Os.2066.1.S1_a_at11/111+6218442..6221131TCP family transcription factor containing protein, expressed
LOC_Os01g11550Os.2066.2.S1_x_at11/111+6218442..6221131TCP family transcription factor containing protein, expressed
LOC_Os01g11570Os.7905.1.S1_at11/111+6239311..6241681GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11570OsAffx.26077.1.S1_at5/111+6239311..6241681GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11580Os.37125.2.S1_x_at11/111+6244899..6250200DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os01g11580OsAffx.23202.1.S1_x_at11/111+6244899..6250200DNA-binding bromodomain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0048366biological_processleaf development
GO:0009507cellular_componentchloroplast
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2066.2.S1_x_at--665--3491Chr01:6219500..6219524 (25 bp)
CAGGCGCAGAACCAGCGCATGCTGC
LOC_Os01g11550
Os.2066.2.S1_x_at--349--9971Chr01:6219434..6219458 (25 bp)
TACCTGTTCAACGTGTCGCAGCAAG
LOC_Os01g11550
Os.2066.2.S1_x_at--834--3411Chr01:6219368..6219392 (25 bp)
CAGAGCCAGTTCTTCTTCCAGAGGG
LOC_Os01g11550
Os.2066.2.S1_x_at--282--1171Chr01:6219329..6219353 (25 bp)
AGTAACCAGCCCTCCGAGCGAGGAT
LOC_Os01g11550
Os.2066.2.S1_x_at--406--7231Chr01:6219293..6219317 (25 bp)
GTCGAAGCCGACAACCAGATGAGCC
LOC_Os01g11550
Os.2066.2.S1_x_at--739--4351Chr01:6219279..6219303 (25 bp)
CCAGATGAGCCACCACCAAGGAGGG
LOC_Os01g11550
Os.2066.2.S1_x_at--402--4531Chr01:6218876..6219144 (25 bp)
GCCGCCGTCGAATTGTCGATTGCAT
LOC_Os01g11550
Os.2066.2.S1_x_at--28--2871Chr01:6218822..6218846 (25 bp)
AAGTGCACTACTACTGATGCTACTA
LOC_Os01g11550
Os.2066.2.S1_x_at--921--6271Chr01:6218807..6218831 (25 bp)
GATGCTACTACATATCGGTTGGTTG
LOC_Os01g11550
Os.2066.2.S1_x_at--212--10851Chr01:6218781..6218805 (25 bp)
TTGGTTGGTTTTCCATCGATCTCTT
LOC_Os01g11550
Os.2066.2.S1_x_at--117--4591Chr01:6218748..6218772 (25 bp)
GCGCATGTCATTGGTTTTTGTTTCA
LOC_Os01g11550
Target Sequence 
CAGGCGCAGAACCAGCGCATGCTGCCGTGGAACGTGCCCGACCCCGGCGGCGGCGGCGGCGCCGCCTACCTGTTCAACGT
GTCGCAGCAAGCGGCGCATATGCAGGCGGCGGCTGCGGCGCTGGGTGGCCACCAGAGCCAGTTCTTCTTCCAGAGGGGAC
CCCTTCAGTCCAGTAACCAGCCCTCCGAGCGAGGATGGCCGGAGACCGTCGAAGCCGACAACCAGATGAGCCACCACCAA
GGAGGGCTGAGCCCCTCCGTGTCGGCGGCCATCGGTTTTGCCGCTCCCGGCATCGGCTTCTCCGGCTTCCGCCTCCCCGC
GAGGATACAGGGCGACGAGGAGCACAACGGCGGCGGCGGCGGCAATGGCGACAAGCCGCCGCCGCCGTCGAATTGTCGAT
TGCATTCGGGAGGAGCAAAGTTTGGAGGTAGCACAAGTGCACTACTACTGATGCTACTACATATCGGTTGGTTGGTTGGT
TGGTTTTCCATCGATCTCTTCTGCTGCTGCGCATGTCATTGGTTTTTGTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2066.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis