Browse Element(s) Details


Os.10626.4.A1_s_at

Description gb:NM_186973.1
DB_XREF= gi:34901031
GEN=P0483E06.17
TID=Os.10626.4
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10626 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0038J17.14 (OSJNBa0038J17.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) reverse transcriptase-like protein (P0483E06.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2443011/11hypothetical protein
LOC_Os05g0640011/11hypothetical protein
LOC_Os01g1153011/11hypothetical protein
LOC_Os07g1596011/11hypothetical protein
LOC_Os04g1237011/11hypothetical protein
LOC_Os09g0904011/11hypothetical protein
LOC_Os12g2249011/11hypothetical protein
LOC_Os07g3502011/11hypothetical protein
LOC_Os06g326108/11expressed protein
LOC_Os10g244802/11expressed protein
LOC_Os01g295071/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g24420NANA6+14300913..14309736transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g24430Os.10626.4.A1_s_at11/116+14314897..14315520hypothetical protein
LOC_Os06g24440Os.14491.2.S1_x_at3/116+14318274..14324852transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g24440Os.47463.1.S1_x_at3/116+14318274..14324852transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g24440Os.40288.1.S1_x_at1/116+14318274..14324852transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g24440Os.41248.4.S1_x_at1/116+14318274..14324852transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g24450NANA6+14325222..14327797retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g24460NANA6+14331375..14331900PDR-type ABC transporter 1, putative
LOC_Os06g24470OsAffx.4928.1.S1_at11/116+14336586..14338038hypothetical protein
LOC_Os06g24470OsAffx.8319.1.S1_x_at1/116+14336586..14338038hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10626.4.A1_s_at--700--30715Chr12:12692089..12692113 (25 bp)
AATCAGCTCCAAGAACTATCATGCA
LOC_Os12g22490
Os.10626.4.A1_s_at--352--14315Chr12:13570270..13570294 (25 bp)
AGAACTATCATGCATGTGTGTCCAT
NONE
Os.10626.4.A1_s_at--339--35118Chr12:12692108..12692132 (25 bp)
CATGCATGTGTGTCCATGAGGTTAG
LOC_Os12g22490
Os.10626.4.A1_s_at--201--72711Chr12:12692119..12692143 (25 bp)
GTCCATGAGGTTAGAGAGGCCCCAG
LOC_Os12g22490
Os.10626.4.A1_s_at--586--48510Chr12:12692148..12692172 (25 bp)
GCTACTGATGCATGGAATTGGGTTG
LOC_Os12g22490
Os.10626.4.A1_s_at--995--84911Chr12:12692160..12692184 (25 bp)
TGGAATTGGGTTGGTACTCACCGGA
LOC_Os12g22490
Os.10626.4.A1_s_at--350--53720Chr12:12692225..12692249 (25 bp)
GAAGACGGTGGACGATCTCCACACT
LOC_Os12g22490
Os.10626.4.A1_s_at--1114--75121Chr12:12692232..12692256 (25 bp)
GTGGACGATCTCCACACTCGTAGCA
LOC_Os12g22490
Os.10626.4.A1_s_at--1055--69513Chr12:12692251..12692275 (25 bp)
GTAGCACCATCCTTCGAGATTCTTG
LOC_Os12g22490
Os.10626.4.A1_s_at--549--33712Chr12:12692255..12692279 (25 bp)
CACCATCCTTCGAGATTCTTGAGGG
LOC_Os12g22490
Os.10626.4.A1_s_at--109--64717Chr12:12692340..12692364 (25 bp)
GATAAGCGGGAACGGCGATGATGTC
LOC_Os12g22490
Target Sequence 
AATCAGCTCCAAGAACTATCATGCATGTGTGTCCATGAGGTTAGAGAGGCCCCAGGGATGCTACTGATGCATGGAATTGG
GTTGGTACTCACCGGAGGGGGTGGATTCGGCAACGGCGACGGTGACCGGAGGTGGAGAAGACGGTGGACGATCTCCACAC
TCGTAGCACCATCCTTCGAGATTCTTGAGGGGAAATGGANAGGAGGTCGAGGCGAAGACGCTGGCGNGACAGCTTGGCCC
GNCTTGGTNCAGATAAGCGGGAACGGCGATGATGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10626.4.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis