Browse Element(s) Details


OsAffx.4928.1.S1_at

Description tigr:9634.m02421
TID=OsAffx.4928.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2447011/11hypothetical protein
LOC_Os06g188101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g24430Os.10626.4.A1_s_at11/116+14314897..14315520hypothetical protein
LOC_Os06g24440Os.14491.2.S1_x_at3/116+14318274..14324852transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g24440Os.47463.1.S1_x_at3/116+14318274..14324852transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g24440Os.40288.1.S1_x_at1/116+14318274..14324852transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g24440Os.41248.4.S1_x_at1/116+14318274..14324852transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g24450NANA6+14325222..14327797retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g24460NANA6+14331375..14331900PDR-type ABC transporter 1, putative
LOC_Os06g24470OsAffx.4928.1.S1_at11/116+14336586..14338038hypothetical protein
LOC_Os06g24470OsAffx.8319.1.S1_x_at1/116+14336586..14338038hypothetical protein
LOC_Os06g24480NANA6+14341649..14342274hypothetical protein
LOC_Os06g24490Os.53277.1.S1_at11/116+14346072..14347227expressed protein
LOC_Os06g24500OsAffx.11458.1.S1_s_at1/116+14350929..14351618hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4928.1.S1_at--765--6291Chr06:14337979..14338003 (25 bp)
GATGATATGTTCCAGCTACGATGCC
LOC_Os06g24470
OsAffx.4928.1.S1_at--699--10111Chr06:14337974..14337998 (25 bp)
TATGTTCCAGCTACGATGCCAAGTC
LOC_Os06g24470
OsAffx.4928.1.S1_at--1110--1551Chr06:14337966..14337990 (25 bp)
AGCTACGATGCCAAGTCCGATCACA
LOC_Os06g24470
OsAffx.4928.1.S1_at--292--6351Chr06:14337960..14337984 (25 bp)
GATGCCAAGTCCGATCACACTGTGG
LOC_Os06g24470
OsAffx.4928.1.S1_at--938--7531Chr06:14337939..14337963 (25 bp)
GTGGCTATCGTGGTTACTTGTGTCA
LOC_Os06g24470
OsAffx.4928.1.S1_at--136--511Chr06:14337933..14337957 (25 bp)
ATCGTGGTTACTTGTGTCACCTCTA
LOC_Os06g24470
OsAffx.4928.1.S1_at--247--7111Chr06:14337918..14337942 (25 bp)
GTCACCTCTACCGTGTCATCAATGG
LOC_Os06g24470
OsAffx.4928.1.S1_at--1098--6051Chr06:14337894..14337918 (25 bp)
GAGTTGTTATCTACTGATGGCACCA
LOC_Os06g24470
OsAffx.4928.1.S1_at--505--2511Chr06:14337858..14337882 (25 bp)
AACATCAACATCCTTGATAGTACCA
LOC_Os06g24470
OsAffx.4928.1.S1_at--1053--572Chr06:14337822..14337846 (25 bp)
ACCAACTGTTTGACGGTTGGCCTTG
LOC_Os06g24470
OsAffx.4928.1.S1_at--930--1811Chr06:14337775..14337799 (25 bp)
ACGCCAGGGTTACGTGCCAGACCAT
LOC_Os06g24470
Target Sequence 
GATGATATGTTCCAGCTACGATGCCAAGTCCGATCACACTGTGGCTATCGTGGTTACTTGTGTCACCTCTACCGTGTCAT
CAATGGAGTTGTTATCTACTGATGGCACCATTGGCGGCACCAACATCAACATCCTTGATAGTACCAAGGCGATGCTCACC
AACTGTTTGACGGTTGGCCTTGATGTCAAAGGGTGGTGCAGACCACGCCAGGGTTACGTGCCAGACCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4928.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis