Browse Element(s) Details

Os.40531.1.A1_x_at

Description

gb:NM_194038.1
DB_XREF= gi:34915159
GEN=P0503E05.31
TID=Os.40531.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.40531 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0503E05.31 (P0503E05.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0503E05.31 (P0503E05.31), mRNA.
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g32610	7/11	expressed protein
LOC_Os07g35020	3/11	hypothetical protein
LOC_Os05g06400	3/11	hypothetical protein
LOC_Os04g12370	3/11	hypothetical protein
LOC_Os12g22490	3/11	hypothetical protein
LOC_Os01g11530	1/11	hypothetical protein
LOC_Os04g18950	1/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g32560	Os.23706.1.A1_x_at	1/11	6	+	18936419..18939147	retrotransposon protein, putative, unclassified
LOC_Os06g32570	NA	NA	6	+	18940161..18940789	retrotransposon protein, putative, unclassified
LOC_Os06g32580	NA	NA	6	+	18950377..18951739	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32590	OsAffx.27899.1.S1_at	11/11	6	+	18952590..18953116	hypothetical protein
LOC_Os06g32600	Os.23224.1.S1_s_at	11/11	6	+	18954484..18955524	Plant thionin family protein, expressed
LOC_Os06g32600	Os.23224.1.S1_at	10/11	6	+	18954484..18955524	Plant thionin family protein, expressed
LOC_Os06g32610	Os.10626.4.A1_s_at	8/11	6	+	18957410..18958024	expressed protein
LOC_Os06g32610	Os.40531.1.A1_x_at	7/11	6	+	18957410..18958024	expressed protein
LOC_Os06g32610	Os.40531.1.A1_at	6/11	6	+	18957410..18958024	expressed protein
LOC_Os06g32610	OsAffx.14684.1.S1_at	1/11	6	+	18957410..18958024	expressed protein
LOC_Os06g32619	NA	NA	6	+	18966200..18967712	NA
LOC_Os06g32630	Os.40855.5.S1_x_at	6/11	6	+	18975073..18979695	hypothetical protein
LOC_Os06g32630	Os.40360.1.S1_at	2/11	6	+	18975073..18979695	hypothetical protein
LOC_Os06g32630	Os.6227.1.S1_at	1/11	6	+	18975073..18979695	hypothetical protein
LOC_Os06g32630	Os.40360.1.S1_x_at	1/11	6	+	18975073..18979695	hypothetical protein
LOC_Os06g32630	OsAffx.15821.2.S1_at	1/11	6	+	18975073..18979695	hypothetical protein
LOC_Os06g32630	OsAffx.22548.1.S1_at	1/11	6	+	18975073..18979695	hypothetical protein
LOC_Os06g32640	OsAffx.23566.1.S1_at	1/11	6	+	18982186..18982908	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.40531.1.A1_x_at--706--213	13	Chr12:12692378..12692402 (25 bp)	ACAGAGCGCGCTCTAGAGCGACCAT	LOC_Os12g22490
Os.40531.1.A1_x_at--868--137	11	Chr12:12692392..12692416 (25 bp)	AGAGCGACCATGACATGGCGGCGTT	LOC_Os12g22490
Os.40531.1.A1_x_at--1152--211	9	Chr12:12692404..12692428 (25 bp)	ACATGGCGGCGTTCCCGCTGCTGTA	LOC_Os12g22490
Os.40531.1.A1_x_at--848--793	9	Chr12:12692446..12692470 (25 bp)	GGATCAAAACCAAAGTTGTTCGTCA	NONE
Os.40531.1.A1_x_at--622--329	9	Chr12:12692456..12692480 (25 bp)	CAAAGTTGTTCGTCATGGTGAGATG	NONE
Os.40531.1.A1_x_at--710--935	10	Chr10:17064471..17064495 (25 bp)	TCGACGACGGTTGGCGATGTCCCTC	NONE
Os.40531.1.A1_x_at--515--1087	16	Chr12:12692527..12692551 (25 bp)	TTGGCGATGTCCCTCTTCTTGGCGG	NONE
Os.40531.1.A1_x_at--537--263	1	Chr01:14916066..14916090 (25 bp)	AACCTAGGAGCACCACCATCGGGAT	NONE
Os.40531.1.A1_x_at--283--807	1	Chr01:14916072..14916096 (25 bp)	GGAGCACCACCATCGGGATCTACTG	NONE
Os.40531.1.A1_x_at--134--51	1	Chr01:14916083..14916107 (25 bp)	ATCGGGATCTACTGCGTCACCGTCG	NONE
Os.40531.1.A1_x_at--266--45	1	Chr01:14916089..14916113 (25 bp)	ATCTACTGCGTCACCGTCGAGGCAA	NONE

Target Sequence

ACAGAGCGCGCTCTAGAGCGACCATGACATGGCGGCGTTCCCGCTGCTGTANAAGATGAAATGGAATGGGATCAAAACCA
AAGTTGTTCGTCATGGTGAGATGAGAATGGAACGAGTATGAGTTAGAGATGNAGAGGGCTCGACGACGGTTGGCGATGTC
CCTCTTCTTGGCGGCCGGCGACGAAAGAGAGGTGGAGAGGGAGAGCTGGAGCTTCCTCCCTNGGTTGGATCGGNNNNGGA
ATGGNNGNCGGAAGGGAGAACGAGAGGAGCGGTGTCAAGAAAGTGTGCGGTGGGGGAGAAGAGGAGCCTACCGGCAACCT
AGGAGCACCACCATCGGGATCTACTGCGTCACCGTCGAGGCAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis