Browse Element(s) Details


OsAffx.27899.1.S1_at

Description tigr:9634.m03051
TID=OsAffx.27899.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3259011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g32540OsAffx.15703.1.S1_x_at11/116+18927460..18927889hypothetical protein
LOC_Os06g32540OsAffx.15703.1.S1_at11/116+18927460..18927889hypothetical protein
LOC_Os06g32540OsAffx.18934.1.S1_x_at2/116+18927460..18927889hypothetical protein
LOC_Os06g32550Os.23224.1.S1_s_at4/116+18929753..18930413Plant thionin family protein
LOC_Os06g32560Os.23706.1.A1_x_at1/116+18936419..18939147retrotransposon protein, putative, unclassified
LOC_Os06g32570NANA6+18940161..18940789retrotransposon protein, putative, unclassified
LOC_Os06g32580NANA6+18950377..18951739transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32590OsAffx.27899.1.S1_at11/116+18952590..18953116hypothetical protein
LOC_Os06g32600Os.23224.1.S1_s_at11/116+18954484..18955524Plant thionin family protein, expressed
LOC_Os06g32600Os.23224.1.S1_at10/116+18954484..18955524Plant thionin family protein, expressed
LOC_Os06g32610Os.10626.4.A1_s_at8/116+18957410..18958024expressed protein
LOC_Os06g32610Os.40531.1.A1_x_at7/116+18957410..18958024expressed protein
LOC_Os06g32610Os.40531.1.A1_at6/116+18957410..18958024expressed protein
LOC_Os06g32610OsAffx.14684.1.S1_at1/116+18957410..18958024expressed protein
LOC_Os06g32619NANA6+18966200..18967712NA
LOC_Os06g32630Os.40855.5.S1_x_at6/116+18975073..18979695hypothetical protein
LOC_Os06g32630Os.40360.1.S1_at2/116+18975073..18979695hypothetical protein
LOC_Os06g32630Os.6227.1.S1_at1/116+18975073..18979695hypothetical protein
LOC_Os06g32630Os.40360.1.S1_x_at1/116+18975073..18979695hypothetical protein
LOC_Os06g32630OsAffx.15821.2.S1_at1/116+18975073..18979695hypothetical protein
LOC_Os06g32630OsAffx.22548.1.S1_at1/116+18975073..18979695hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27899.1.S1_at--198--10231Chr06:18952639..18952880 (25 bp)
TATTCCTTTTACAAAGACATGGACA
LOC_Os06g32590
OsAffx.27899.1.S1_at--1052--5631Chr06:18952875..18952895 (21 bp)
GACATGGACAAAGAAACGTCGTCTT
LOC_Os06g32590
OsAffx.27899.1.S1_at--771--2731Chr06:18952881..18952905 (25 bp)
AAGAAACGTCGTCTTGAGCTTCAAG
LOC_Os06g32590
OsAffx.27899.1.S1_at--106--2391Chr06:18952884..18952908 (25 bp)
AAACGTCGTCTTGAGCTTCAAGAAG
LOC_Os06g32590
OsAffx.27899.1.S1_at--139--4871Chr06:18952898..18952922 (25 bp)
GCTTCAAGAAGGGACGACGGTGCCC
LOC_Os06g32590
OsAffx.27899.1.S1_at--921--5291Chr06:18952905..18952929 (25 bp)
GAAGGGACGACGGTGCCCAGAACCT
LOC_Os06g32590
OsAffx.27899.1.S1_at--211--7791Chr06:18952916..18952940 (25 bp)
GGTGCCCAGAACCTCAGGTGAAGCA
LOC_Os06g32590
OsAffx.27899.1.S1_at--880--5431Chr06:18952924..18952947 (24 bp)
GAACCTCAGGTGAAGCAGATCTGGA
LOC_Os06g32590
OsAffx.27899.1.S1_at--445--7351Chr06:18952933..18953042 (25 bp)
GTGAAGCAGATCTGGAACCACCTTG
LOC_Os06g32590
OsAffx.27899.1.S1_at--712--5391Chr06:18952935..18953044 (25 bp)
GAAGCAGATCTGGAACCACCTTGGG
LOC_Os06g32590
OsAffx.27899.1.S1_at--327--131Chr06:18953061..18953085 (25 bp)
ATTCATGTGGGATGGGCCACATGGA
LOC_Os06g32590
Target Sequence 
TATTCCTTTTACAAAGACATGGACAAAGAAACGTCGTCTTGAGCTTCAAGAAGGGACGACGGTGCCCAGAACCTCAGGTG
AAGCAGATCTGGAACCACCTTGGGGGCGTGGAGATGGTGGATTCATGTGGGATGGGCCACATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27899.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis