Browse Element(s) Details

Os.23224.1.S1_s_at

Description

gb:CR288926
DB_XREF= gi:44675492
DB_XREF=CR288926
CLONE=p447e12p3
TID=Os.23224.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.23224 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_176784.1 (A.thaliana) thionin, putative (Arabidopsis thaliana)
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g32600	11/11	Plant thionin family protein, expressed
LOC_Os06g32550	4/11	Plant thionin family protein
LOC_Os06g32370	1/11	Plant thionin family protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g32550	Os.23224.1.S1_s_at	4/11	6	+	18929753..18930413	Plant thionin family protein
LOC_Os06g32560	Os.23706.1.A1_x_at	1/11	6	+	18936419..18939147	retrotransposon protein, putative, unclassified
LOC_Os06g32570	NA	NA	6	+	18940161..18940789	retrotransposon protein, putative, unclassified
LOC_Os06g32580	NA	NA	6	+	18950377..18951739	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32590	OsAffx.27899.1.S1_at	11/11	6	+	18952590..18953116	hypothetical protein
LOC_Os06g32600	Os.23224.1.S1_s_at	11/11	6	+	18954484..18955524	Plant thionin family protein, expressed
LOC_Os06g32600	Os.23224.1.S1_at	10/11	6	+	18954484..18955524	Plant thionin family protein, expressed
LOC_Os06g32610	Os.10626.4.A1_s_at	8/11	6	+	18957410..18958024	expressed protein
LOC_Os06g32610	Os.40531.1.A1_x_at	7/11	6	+	18957410..18958024	expressed protein
LOC_Os06g32610	Os.40531.1.A1_at	6/11	6	+	18957410..18958024	expressed protein
LOC_Os06g32610	OsAffx.14684.1.S1_at	1/11	6	+	18957410..18958024	expressed protein
LOC_Os06g32619	NA	NA	6	+	18966200..18967712	NA
LOC_Os06g32630	Os.40855.5.S1_x_at	6/11	6	+	18975073..18979695	hypothetical protein
LOC_Os06g32630	Os.40360.1.S1_at	2/11	6	+	18975073..18979695	hypothetical protein
LOC_Os06g32630	Os.6227.1.S1_at	1/11	6	+	18975073..18979695	hypothetical protein
LOC_Os06g32630	Os.40360.1.S1_x_at	1/11	6	+	18975073..18979695	hypothetical protein
LOC_Os06g32630	OsAffx.15821.2.S1_at	1/11	6	+	18975073..18979695	hypothetical protein
LOC_Os06g32630	OsAffx.22548.1.S1_at	1/11	6	+	18975073..18979695	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0006952	biological_process	defense response
GO:0042829	biological_process	defense response to pathogen
GO:0050827	molecular_function	toxin receptor binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.23224.1.S1_s_at--830--171	3	Chr06:18955314..18955338 (25 bp)	ACCACCACGGCAAGAAACATCTATA	LOC_Os06g32600
Os.23224.1.S1_s_at--82--45	2	Chr06:18955296..18955320 (25 bp)	ATCTATAATGCATGCCGTTTTGCGC	LOC_Os06g32600
Os.23224.1.S1_s_at--126--107	2	Chr06:18955263..18955287 (25 bp)	AGGGAAAGATGTTCTAAACTCTCTG	LOC_Os06g32600
Os.23224.1.S1_s_at--864--515	2	Chr06:18954810..18954834 (25 bp)	GCAACGAAGCATGCTACCACTTCTG	LOC_Os06g32600
Os.23224.1.S1_s_at--867--495	1	Chr06:18954731..18954755 (25 bp)	GCATAAGGGACTTGAATTCGCACTT	LOC_Os06g32600
Os.23224.1.S1_s_at--459--1075	1	Chr06:18954720..18954744 (25 bp)	TTGAATTCGCACTTTGAATCCCCTG	LOC_Os06g32600
Os.23224.1.S1_s_at--1022--525	1	Chr06:18954705..18954729 (25 bp)	GAATCCCCTGCAAGGCTATATATGC	LOC_Os06g32600
Os.23224.1.S1_s_at--11--883	1	Chr06:18954646..18954670 (25 bp)	TGATATCCAAACCAGTGTGCCGGCC	LOC_Os06g32600
Os.23224.1.S1_s_at--864--843	1	Chr06:18954625..18954649 (25 bp)	GGCCATCTCTCATGTTTGTTTACGA	LOC_Os06g32600
Os.23224.1.S1_s_at--260--877	2	Chr06:18954609..18954633 (25 bp)	TGTTTACGACACTTTGTATTTCTAA	LOC_Os06g32600
Os.23224.1.S1_s_at--1126--23	2	Chr06:18954565..18954589 (25 bp)	ATATAATCGCATTCTACCATCTTCT	LOC_Os06g32600

Target Sequence

ACCACCACGGCAAGAAACATCTATAATGCATGCCGTTTTGCGCATGGCACAAGGGAAAGATGTTCTAAACTCTCTGNCTG
CAAAATTGTTGATGGGAAATGCAAGCCACCTTACATTCACCACACCCTTCACCCTGAGTCTGAGGAATTGGATGTNCTTG
ACTTCTGTATGCTGGGATGTACTTCATCCGTGTGCAGCAACATAAACACTTTTGCTGGCAACGAAGAAGGGAACGGTGCT
GTGGAACGTTGCAACGAAGCATGCTACCACTTCTGCAACAAGGAAGCTGATATTGTCACTATCGTTTCCTAAACAACTGC
ATCATGCAAGCATAAGGGACTTGAATTCGCACTTTGAATCCCCTGCAAGGCTATATATGCTGCCCTAGAGTAGTCATAAA
TAAGTTGGATATCATGATATCCAAACCAGTGTGCCGGCCATCTCTCATGTTTGTTTACGACACTTTGTATTTCTAATAAG
CTTATAAGCCATGATATATAATCGCATTCTACCATCTTCT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis