Browse Element(s) Details


Os.23706.1.A1_x_at

Description gb:CA760300
DB_XREF= gi:25804339
DB_XREF=BR060012B10G04.ab1
CLONE=BR060012B10G04.ab1
TID=Os.23706.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.23706 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g202001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g091801/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g177501/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g176301/11retrotransposon protein, putative, unclassified
LOC_Os05g180201/11transposon protein, putative, unclassified
LOC_Os05g175801/11retrotransposon protein, putative, unclassified
LOC_Os09g090801/11retrotransposon protein, putative, unclassified
LOC_Os05g173301/11retrotransposon protein, putative, unclassified
LOC_Os06g323901/11retrotransposon protein, putative, unclassified
LOC_Os07g207801/11retrotransposon protein, putative, unclassified
LOC_Os10g150401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g112601/11transposon protein, putative, unclassified
LOC_Os09g091101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g230701/11retrotransposon protein, putative, unclassified
LOC_Os02g253901/11retrotransposon protein, putative, unclassified
LOC_Os08g241201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g225701/11retrotransposon protein, putative, unclassified
LOC_Os11g231201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g289301/11retrotransposon protein, putative, unclassified
LOC_Os07g115701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g331421/11hypothetical protein
LOC_Os05g519501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g110801/11retrotransposon protein, putative, unclassified
LOC_Os05g180501/11retrotransposon protein, putative, unclassified
LOC_Os12g268201/11retrotransposon protein, putative, unclassified
LOC_Os04g140501/11retrotransposon protein, putative, unclassified
LOC_Os09g091201/11retrotransposon protein, putative, unclassified
LOC_Os03g263291/11retrotransposon protein, putative, unclassified
LOC_Os06g325601/11retrotransposon protein, putative, unclassified
LOC_Os05g180601/11retrotransposon protein, putative, unclassified
LOC_Os02g130001/11retrotransposon protein, putative, unclassified
LOC_Os05g208001/11retrotransposon protein, putative, unclassified
LOC_Os05g241201/11retrotransposon protein, putative, unclassified
LOC_Os12g176201/11retrotransposon protein, putative, unclassified
LOC_Os07g130701/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g244601/11retrotransposon protein, putative, unclassified, expressed
LOC_Os07g242601/11retrotransposon protein, putative, unclassified
LOC_Os04g064021/11retrotransposon protein, putative, unclassified
LOC_Os05g194301/11retrotransposon protein, putative, unclassified
LOC_Os06g033001/11transposon protein, putative, unclassified
LOC_Os12g083701/11retrotransposon protein, putative, unclassified
LOC_Os04g272601/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g064501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g140601/11retrotransposon protein, putative, unclassified
LOC_Os04g063741/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g180301/11retrotransposon protein, putative, unclassified
LOC_Os07g246201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g032801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g182901/11transposon protein, putative, unclassified
LOC_Os04g453801/11transposon protein, putative, unclassified
LOC_Os01g479601/11retrotransposon protein, putative, unclassified
LOC_Os02g238281/11retrotransposon protein, putative, unclassified
LOC_Os02g180641/11expressed protein
LOC_Os04g381401/11retrotransposon protein, putative, unclassified
LOC_Os01g200501/11retrotransposon protein, putative, unclassified
LOC_Os02g043501/11retrotransposon protein, putative, unclassified
LOC_Os09g090601/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g014301/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g090001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g240801/11retrotransposon protein, putative, unclassified
LOC_Os05g173101/11transposon protein, putative, unclassified
LOC_Os12g182701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g177201/11retrotransposon protein, putative, unclassified
LOC_Os09g240801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g267721/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g158301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g375701/11retrotransposon protein, putative, unclassified
LOC_Os01g409001/11retrotransposon protein, putative, unclassified
LOC_Os09g090201/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g20160OsAffx.22699.1.S1_x_at3/115+11775016..11780906retrotransposon protein, putative, unclassified
LOC_Os05g20170NANA5+11787600..11789577retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g20180OsAffx.16505.2.S1_x_at1/115+11789826..11797519retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g20190Os.10731.2.A1_at1/115+11799535..11801217transposon protein, putative, unclassified
LOC_Os05g20200Os.53142.1.S1_at2/115+11801945..11808058retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g20200Os.23706.1.A1_x_at1/115+11801945..11808058retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g20210Os.53142.1.S1_at1/115+11813059..11815122retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g20220NANA5+11817285..11818581transposon protein, putative, unclassified
LOC_Os05g20230NANA5+11824572..11831293retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23706.1.A1_x_at--70--3671NONE
CTTACATTATTCATGCATCTCCCAG
NONE
Os.23706.1.A1_x_at--812--9871NONE
TACATTATTCATGCATCTCCCAGTG
NONE
Os.23706.1.A1_x_at--1035--2071Chr12:14987729..14987752 (24 bp)
ACATTATTCATGCATCTCCCAGTGT
NONE
Os.23706.1.A1_x_at--82--171Chr12:14987727..14987751 (25 bp)
ATTATTCATGCATCTCCCAGTGTGA
NONE
Os.23706.1.A1_x_at--970--10411Chr12:14987726..14987750 (25 bp)
TTATTCATGCATCTCCCAGTGTGAC
NONE
Os.23706.1.A1_x_at--1022--10211Chr12:14987725..14987749 (25 bp)
TATTCATGCATCTCCCAGTGTGACT
NONE
Os.23706.1.A1_x_at--1093--111Chr12:14987724..14987748 (25 bp)
ATTCATGCATCTCCCAGTGTGACTT
NONE
Os.23706.1.A1_x_at--420--9612Chr05:11464006..11464030 (25 bp)
TCATGCATCTCCCAGTGTGACTTGC
NONE
Os.23706.1.A1_x_at--144--652Chr05:11464008..11464031 (24 bp)
ATGCATCTCCCAGTGTGACTTGCTG
NONE
Os.23706.1.A1_x_at--660--4971Chr12:14987718..14987742 (25 bp)
GCATCTCCCAGTGTGACTTGCTGAG
NONE
Os.23706.1.A1_x_at--12--789231Chr12:14330056..14330551 (25 bp)
GGTTATACTCATTCTTGCTCTATCT
NONE
Target Sequence 
CTTACATTATTCATGCATCTCCCAGTGTGACTTGCTGAGTACTGTGGTTATACTCATTCTTGCTCTATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23706.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis