Browse Element(s) Details


OsAffx.23566.1.S1_at

Description tigr:9629.m03695
TID=OsAffx.23566.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3889010/11hypothetical protein
LOC_Os03g318101/11hypothetical protein
LOC_Os06g326401/11hypothetical protein
LOC_Os06g413201/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38850OsAffx.23564.1.S1_at11/111+22121139..22123981hypothetical protein
LOC_Os01g38860OsAffx.23565.1.S1_at11/111+22131659..22132625hypothetical protein
LOC_Os01g38860OsAffx.28894.1.S1_at2/111+22131659..22132625hypothetical protein
LOC_Os01g38870OsAffx.2188.1.S1_at11/111+22135323..22137350hypothetical protein
LOC_Os01g38870Os.45902.1.A1_x_at4/111+22135323..22137350hypothetical protein
LOC_Os01g38870OsAffx.10222.1.S1_x_at2/111+22135323..22137350hypothetical protein
LOC_Os01g38870Os.46808.2.S1_x_at1/111+22135323..22137350hypothetical protein
LOC_Os01g38880OsAffx.11381.1.S1_at11/111+22141643..22144128hypothetical protein
LOC_Os01g38880OsAffx.15057.1.S1_at1/111+22141643..22144128hypothetical protein
LOC_Os01g38890OsAffx.23566.1.S1_at10/111+22148428..22153078hypothetical protein
LOC_Os01g38890OsAffx.29326.1.S1_at2/111+22148428..22153078hypothetical protein
LOC_Os01g38900OsAffx.23567.1.S1_at11/111+22164473..22172947Protein kinase domain containing protein
LOC_Os01g38900Os.39431.1.S1_at1/111+22164473..22172947Protein kinase domain containing protein
LOC_Os01g38900Os.39431.1.S1_x_at1/111+22164473..22172947Protein kinase domain containing protein
LOC_Os01g38910OsAffx.23568.1.S1_at11/111+22174341..22174931hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23566.1.S1_at--1148--2071NONE
ACAGTACGTGGAGTCAAGGGAAGAA
NONE
OsAffx.23566.1.S1_at--252--5291Chr01:22151423..22151447 (25 bp)
GAAGTTGTAAGGATAGCGGAGTCTC
LOC_Os01g38890
OsAffx.23566.1.S1_at--1059--7954Chr06:24737036..24737060 (24 bp)
GGATCAACTCAAGTCTTGTACACGG
NONE
OsAffx.23566.1.S1_at--417--7133Chr04:24150611..24150630 (20 bp)
GTCTTGTACACGGAGATTCGAGCAA
NONE
OsAffx.23566.1.S1_at--1081--5171Chr01:22150912..22151330 (25 bp)
GCAAGTAACGAATTCAGTTCGGTCT
LOC_Os01g38890
OsAffx.23566.1.S1_at--531--5215Chr06:18982352..18982372 (21 bp)
GAATTCAGTTCGGTCTTTGAAAACT
LOC_Os06g32640
OsAffx.23566.1.S1_at--136--2411Chr01:22150900..22150924 (25 bp)
AAAAATTCGGTCTCTGTCTCAGTCT
LOC_Os01g38890
OsAffx.23566.1.S1_at--258--9511Chr01:22150890..22150914 (25 bp)
TCTCTGTCTCAGTCTGACCGAATAT
LOC_Os01g38890
OsAffx.23566.1.S1_at--647--4211Chr01:22150873..22150897 (25 bp)
CCGAATATTTTCACAGCCGCTAGAG
LOC_Os01g38890
OsAffx.23566.1.S1_at--709--10331Chr01:22150865..22150889 (25 bp)
TTTCACAGCCGCTAGAGAGAGGAGA
LOC_Os01g38890
OsAffx.23566.1.S1_at--495--5371Chr01:22148475..22148821 (25 bp)
GAAGACGACAGACAGCCTGAGATCA
LOC_Os01g38890
Target Sequence 
ACAGTACGTGGAGTCAAGGGAAGAAGTTGTAAGGATAGCGGAGTCTCTTGTTTACGGTGAGCCTATTGAAGGCTTGTCGG
GGCGGCTCGGCGTGAGCGGCGAAAAAGGATCAACTCAAGTCTTGTACACGGAGATTCGAGCAAGTAACGAATTCAGTTCG
GTCTTTGAAAACTCAGGACCGAATTTCATCCAAAAAATTCGGTCTCTGTCTCAGTCTGACCGAATATTTTCACAGCCGCT
AGAGAGAGGAGACGGAGGCGACGCCGAGGCGGTGCCGGCGCTGGAGGAGGACACGGCGTTGGAGGTGGAGGCGGAGGTGG
AGGGCGCTGGCGCTGGGCGGAGGTGGAGGCGGCGTGCAGGGCAGCGGCGGCCTGCGGTAGCTCCACCGACGCCGTCGGCG
CACCCCCCACCAGCACGGCTGCATGGGGGAGGAGGGGATGTGTTTGATGTCTATTGTATGTATATTGGGATTTGGAATGA
GGAGTACTGGAAGCAGGAAGATGGTGGTGGAGCATGGGGCAGCGTCGAGGAAGACGACAGACAGCCTGAGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23566.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis