Browse Element(s) Details


OsAffx.2188.1.S1_at

Description tigr:9629.m03693
TID=OsAffx.2188.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3887011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38840NANA1+22115734..22117773Protein kinase domain containing protein
LOC_Os01g38850OsAffx.23564.1.S1_at11/111+22121139..22123981hypothetical protein
LOC_Os01g38860OsAffx.23565.1.S1_at11/111+22131659..22132625hypothetical protein
LOC_Os01g38860OsAffx.28894.1.S1_at2/111+22131659..22132625hypothetical protein
LOC_Os01g38870OsAffx.2188.1.S1_at11/111+22135323..22137350hypothetical protein
LOC_Os01g38870Os.45902.1.A1_x_at4/111+22135323..22137350hypothetical protein
LOC_Os01g38870OsAffx.10222.1.S1_x_at2/111+22135323..22137350hypothetical protein
LOC_Os01g38870Os.46808.2.S1_x_at1/111+22135323..22137350hypothetical protein
LOC_Os01g38880OsAffx.11381.1.S1_at11/111+22141643..22144128hypothetical protein
LOC_Os01g38880OsAffx.15057.1.S1_at1/111+22141643..22144128hypothetical protein
LOC_Os01g38890OsAffx.23566.1.S1_at10/111+22148428..22153078hypothetical protein
LOC_Os01g38890OsAffx.29326.1.S1_at2/111+22148428..22153078hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2188.1.S1_at--701--9131Chr01:22136939..22136963 (25 bp)
TGCTGGACTTGAACCTAGCCATCAT
LOC_Os01g38870
OsAffx.2188.1.S1_at--308--9991Chr01:22136924..22136948 (25 bp)
TAGCCATCATGTGCAGATACTCAAG
LOC_Os01g38870
OsAffx.2188.1.S1_at--817--6471Chr01:22136909..22136933 (25 bp)
GATACTCAAGCAAGAGGAGAACCTT
LOC_Os01g38870
OsAffx.2188.1.S1_at--933--8051Chr01:22136894..22136918 (25 bp)
GGAGAACCTTGACGGCATAGAACCT
LOC_Os01g38870
OsAffx.2188.1.S1_at--840--10731Chr01:22136886..22136910 (25 bp)
TTGACGGCATAGAACCTGGAGGACG
LOC_Os01g38870
OsAffx.2188.1.S1_at--859--3531Chr01:22136879..22136903 (25 bp)
CATAGAACCTGGAGGACGCGACGAG
LOC_Os01g38870
OsAffx.2188.1.S1_at--449--8231Chr01:22136848..22136872 (25 bp)
GGCAAGCGGCTGTCGGGCATACGGT
LOC_Os01g38870
OsAffx.2188.1.S1_at--363--1871Chr01:22136731..22136755 (25 bp)
ACGTCGGCCGCATGGTACGGGTCTG
LOC_Os01g38870
OsAffx.2188.1.S1_at--309--6331Chr01:22135434..22135458 (25 bp)
GATGCAGCAAGCGTCGGCACACCAG
LOC_Os01g38870
OsAffx.2188.1.S1_at--76--2671Chr01:22135426..22135450 (25 bp)
AAGCGTCGGCACACCAGGCGTACGT
LOC_Os01g38870
OsAffx.2188.1.S1_at--169--3311Chr01:22135417..22135441 (25 bp)
CACACCAGGCGTACGTGGAGCACGT
LOC_Os01g38870
Target Sequence 
TGCTGGACTTGAACCTAGCCATCATGTGCAGATACTCAAGCAAGAGGAGAACCTTGACGGCATAGAACCTGGAGGACGCG
ACGAGGAAGCGGGCAAGCGGCTGTCGGGCATACGGTGGTGGAGCGAGTGGAGGTCGCCGTCGGGGCAGAACTCCAGCTTG
CCCTTCTTGCCAAACGGCGCAGCAGCGGCACGGATGGGCGCCCAGGCGACGTCGGCCGCATGGTACGGGTCTGGTGGGGA
GGAGGATGTAAAATCAAAGAGAGAATCAATAAAGTCGTCATCCACTTTAAGAGTTCTTCGATTTGTGTTTACCGGGTTTC
GGCGGTCAGACCGGCGGCAAGCGGCGGTCAGACCGGCGGCAAGCGGCGGTCAGACCAGCGGAGGCGACAGGCGCGGCAGG
CGACTTCGGCGGTCAGACCGGAGATTCAACACCGGTCAGACCGGCGGCATCCACTCGATGCAGCAAGCGTCGGCACACCA
GGCGTACGTGGAGCACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2188.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis