Browse Element(s) Details


OsAffx.23565.1.S1_at

Description tigr:9629.m03692
TID=OsAffx.23565.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3886011/11hypothetical protein
LOC_Os05g301801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38830NANA1+22106069..22107838transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g38840NANA1+22115734..22117773Protein kinase domain containing protein
LOC_Os01g38850OsAffx.23564.1.S1_at11/111+22121139..22123981hypothetical protein
LOC_Os01g38860OsAffx.23565.1.S1_at11/111+22131659..22132625hypothetical protein
LOC_Os01g38860OsAffx.28894.1.S1_at2/111+22131659..22132625hypothetical protein
LOC_Os01g38870OsAffx.2188.1.S1_at11/111+22135323..22137350hypothetical protein
LOC_Os01g38870Os.45902.1.A1_x_at4/111+22135323..22137350hypothetical protein
LOC_Os01g38870OsAffx.10222.1.S1_x_at2/111+22135323..22137350hypothetical protein
LOC_Os01g38870Os.46808.2.S1_x_at1/111+22135323..22137350hypothetical protein
LOC_Os01g38880OsAffx.11381.1.S1_at11/111+22141643..22144128hypothetical protein
LOC_Os01g38880OsAffx.15057.1.S1_at1/111+22141643..22144128hypothetical protein
LOC_Os01g38890OsAffx.23566.1.S1_at10/111+22148428..22153078hypothetical protein
LOC_Os01g38890OsAffx.29326.1.S1_at2/111+22148428..22153078hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23565.1.S1_at--629--3811Chr01:22132540..22132564 (25 bp)
CTCCTTGTGGCCGTGGCAGAGACTG
LOC_Os01g38860
OsAffx.23565.1.S1_at--344--8011Chr01:22131832..22132211 (25 bp)
GGAGGCGGCGCTGAAAGTATACAAT
LOC_Os01g38860
OsAffx.23565.1.S1_at--735--5571Chr01:22131799..22131823 (25 bp)
GAAAGTATCCTCATGGGCTGGCGAT
LOC_Os01g38860
OsAffx.23565.1.S1_at--438--571Chr01:22131793..22131817 (25 bp)
ATCCTCATGGGCTGGCGATTATCAG
LOC_Os01g38860
OsAffx.23565.1.S1_at--1151--8331Chr01:22131784..22131808 (25 bp)
GGCTGGCGATTATCAGAGTCCTACT
LOC_Os01g38860
OsAffx.23565.1.S1_at--60--10173Chr05:17414045..17414066 (22 bp)
TATCAGAGTCCTACTCGAAGAGGAT
LOC_Os05g30180
OsAffx.23565.1.S1_at--961--10073Chr04:14527919..14527938 (20 bp)
TAGGGATTATTCTATATCGTGCAGG
NONE
OsAffx.23565.1.S1_at--844--252Chr09:15899601..15899620 (20 bp)
ATATCGTGCAGGGTTTGTTGCCTCC
NONE
OsAffx.23565.1.S1_at--469--7871Chr01:22131726..22131750 (25 bp)
GGTTTGTTGCCTCCGAGTTCTACTT
LOC_Os01g38860
OsAffx.23565.1.S1_at--510--5691Chr01:22131698..22131722 (25 bp)
GACTAAGGCAACTCATGGTATAGAA
LOC_Os01g38860
OsAffx.23565.1.S1_at--652--5151Chr01:22131691..22131715 (25 bp)
GCAACTCATGGTATAGAAGGCACAC
LOC_Os01g38860
Target Sequence 
CTCCTTGTGGCCGTGGCAGAGACTGGAGGCGGCGCCGAGGCGGACGGCGGCGGTCCTCGTGGCCGCAGCGGAGGCTGGAG
GCGGACGGCGGCGGTCCTCGTGGCCGCAGCGCAGGCTGGAGGCGGACAGCGATGCTCGTCGGGGACGCGGCGGAGGCGGG
AGGCGGCGCCGAGGCAAACGGCGGCGCTCGTCGGGACCTCGACGGAGGCGGGAGGTGGTGCTCGTCAGGGCCGCGGCGGC
CGGCGGAGGATGGAGGCGGCGCTCGTCGAGGTCGACTCGGGACCGTGGCGGTCGGCGGAGGCTGGATCGGCGCCGAGGCG
GAAGGCGGCATGATGGATGGGGTGGGGATGGATGGAGGCGGCGCTGAAAGTATACAATATATTATGGAAAGTATCCTCAT
GGGCTGGCGATTATCAGAGTCCTACTCGAAGAGGATAGGGATTATTCTATATCGTGCAGGGTTTGTTGCCTCCGAGTTCT
ACTTGGAGACTAAGGCAACTCATGGTATAGAAGGCACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23565.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis