Browse Element(s) Details


OsAffx.11381.1.S1_at

Description tigr:9629.m03694
TID=OsAffx.11381.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3888011/11hypothetical protein
LOC_Os09g042201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38840NANA1+22115734..22117773Protein kinase domain containing protein
LOC_Os01g38850OsAffx.23564.1.S1_at11/111+22121139..22123981hypothetical protein
LOC_Os01g38860OsAffx.23565.1.S1_at11/111+22131659..22132625hypothetical protein
LOC_Os01g38860OsAffx.28894.1.S1_at2/111+22131659..22132625hypothetical protein
LOC_Os01g38870OsAffx.2188.1.S1_at11/111+22135323..22137350hypothetical protein
LOC_Os01g38870Os.45902.1.A1_x_at4/111+22135323..22137350hypothetical protein
LOC_Os01g38870OsAffx.10222.1.S1_x_at2/111+22135323..22137350hypothetical protein
LOC_Os01g38870Os.46808.2.S1_x_at1/111+22135323..22137350hypothetical protein
LOC_Os01g38880OsAffx.11381.1.S1_at11/111+22141643..22144128hypothetical protein
LOC_Os01g38880OsAffx.15057.1.S1_at1/111+22141643..22144128hypothetical protein
LOC_Os01g38890OsAffx.23566.1.S1_at10/111+22148428..22153078hypothetical protein
LOC_Os01g38890OsAffx.29326.1.S1_at2/111+22148428..22153078hypothetical protein
LOC_Os01g38900OsAffx.23567.1.S1_at11/111+22164473..22172947Protein kinase domain containing protein
LOC_Os01g38900Os.39431.1.S1_at1/111+22164473..22172947Protein kinase domain containing protein
LOC_Os01g38900Os.39431.1.S1_x_at1/111+22164473..22172947Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11381.1.S1_at--479--4271Chr01:22142930..22142954 (25 bp)
CCTCCTAAATGATCTTCCAGTCTTA
LOC_Os01g38880
OsAffx.11381.1.S1_at--374--2551Chr01:22142994..22143018 (25 bp)
AACTGCCCGGTTAGTAGCATTGACA
LOC_Os01g38880
OsAffx.11381.1.S1_at--539--5652Chr09:2227798..2228233 (25 bp)
GACAGGCAAAACCATCTTATCACTA
LOC_Os09g04220
OsAffx.11381.1.S1_at--200--9651Chr01:22143034..22143058 (25 bp)
TCACTAGCCTCACTATTACCAAGTA
LOC_Os01g38880
OsAffx.11381.1.S1_at--845--6631Chr01:22143143..22143167 (25 bp)
GTTGTCTTCTCTCGAAAGTCGCCAT
LOC_Os01g38880
OsAffx.11381.1.S1_at--312--2491Chr01:22143854..22143875 (22 bp)
AACAGCATCAGGGTGATCTCCACAT
LOC_Os01g38880
OsAffx.11381.1.S1_at--16--511Chr01:22143874..22143898 (25 bp)
ATCGTCGACCGCATTAACAGTTTGA
LOC_Os01g38880
OsAffx.11381.1.S1_at--60--10311Chr01:22143910..22143934 (25 bp)
TTTCCCCTTCTATTTCTGATATTGC
LOC_Os01g38880
OsAffx.11381.1.S1_at--1094--6511Chr01:22143927..22143951 (25 bp)
GATATTGCCCGAACTTTTTCTCTTT
LOC_Os01g38880
OsAffx.11381.1.S1_at--338--7611Chr01:22143983..22144007 (25 bp)
GGGAAAGCTTACAGCGGAGTCGCTC
LOC_Os01g38880
OsAffx.11381.1.S1_at--243--6111Chr01:22143999..22144023 (25 bp)
GAGTCGCTCAACATTGAAGTCGCCT
LOC_Os01g38880
Target Sequence 
CCTCCTAAATGATCTTCCAGTCTTAAAAGAATCCAAGAATGACGGGAAGACGCAGCACATTGCCAACTGCCCGGTTAGTA
GCATTGACAGGCAAAACCATCTTATCACTAGCCTCACTATTACCAAGTATGAGAGGAAGCATGAGAACGGGCAATGGGGA
GTCGTGGAATTGTACGAGGTCAGCATTGACATGGACCGTAGAACGGTCTTGGAGTTGTCTTCTCTCGAAAGTCGCCATTC
AAATATATTTGCAGCTGACTTTAGTTGCTGCTTACAACAGCATCAGGGTGATCTCCACATCGTCGACCGCATTAACAGTT
TGATCTTCCCCTTTTTTCCCCTTCTATTTCTGATATTGCCCGAACTTTTTCTCTTTTATGAATTTTCTTTCTTCGAGACA
ATGTCGTGGGAAAGCTTACAGCGGAGTCGCTCAACATTGAAGTCGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11381.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis