Browse Element(s) Details


OsAffx.23564.1.S1_at

Description tigr:9629.m03691
TID=OsAffx.23564.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3885011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38810NANA1+22096317..22098553transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g38820NANA1+22101400..22103896transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g38830NANA1+22106069..22107838transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g38840NANA1+22115734..22117773Protein kinase domain containing protein
LOC_Os01g38850OsAffx.23564.1.S1_at11/111+22121139..22123981hypothetical protein
LOC_Os01g38860OsAffx.23565.1.S1_at11/111+22131659..22132625hypothetical protein
LOC_Os01g38860OsAffx.28894.1.S1_at2/111+22131659..22132625hypothetical protein
LOC_Os01g38870OsAffx.2188.1.S1_at11/111+22135323..22137350hypothetical protein
LOC_Os01g38870Os.45902.1.A1_x_at4/111+22135323..22137350hypothetical protein
LOC_Os01g38870OsAffx.10222.1.S1_x_at2/111+22135323..22137350hypothetical protein
LOC_Os01g38870Os.46808.2.S1_x_at1/111+22135323..22137350hypothetical protein
LOC_Os01g38880OsAffx.11381.1.S1_at11/111+22141643..22144128hypothetical protein
LOC_Os01g38880OsAffx.15057.1.S1_at1/111+22141643..22144128hypothetical protein
LOC_Os01g38890OsAffx.23566.1.S1_at10/111+22148428..22153078hypothetical protein
LOC_Os01g38890OsAffx.29326.1.S1_at2/111+22148428..22153078hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23564.1.S1_at--537--9351Chr01:22123219..22123243 (25 bp)
TCGCAGATGCCGAGGTGGTTCACTG
LOC_Os01g38850
OsAffx.23564.1.S1_at--984--1051Chr01:22123207..22123231 (25 bp)
AGGTGGTTCACTGGCGCCGCCGACT
LOC_Os01g38850
OsAffx.23564.1.S1_at--820--8271Chr01:22122862..22122886 (25 bp)
GGCATGAGCAAAACGGATATCGCAT
LOC_Os01g38850
OsAffx.23564.1.S1_at--912--2571Chr01:22122851..22122875 (25 bp)
AACGGATATCGCATTGATCACCATT
LOC_Os01g38850
OsAffx.23564.1.S1_at--705--51Chr01:22122839..22122863 (25 bp)
ATTGATCACCATTTCTGGAGTTGTT
LOC_Os01g38850
OsAffx.23564.1.S1_at--647--1991Chr01:22122814..22122838 (25 bp)
ACTCCTGTTCTTCCTTTGATTCTAA
LOC_Os01g38850
OsAffx.23564.1.S1_at--1017--6551Chr01:22122797..22122821 (25 bp)
GATTCTAATTGGATTCATCGTAAAG
LOC_Os01g38850
OsAffx.23564.1.S1_at--371--11Chr01:22122463..22122487 (25 bp)
TGACTGGGAGAAGACCGTTACCGAA
LOC_Os01g38850
OsAffx.23564.1.S1_at--1--10391Chr01:22122423..22122447 (25 bp)
TTTTCACTTTATCCTTTCTCCATGA
LOC_Os01g38850
OsAffx.23564.1.S1_at--821--3811Chr01:22122406..22122430 (25 bp)
CTCCATGATAAGAGATGCCACAGAA
LOC_Os01g38850
OsAffx.23564.1.S1_at--330--3731Chr01:22122376..22122400 (25 bp)
CTCAGCAGAAAATAGACTTGGGCAT
LOC_Os01g38850
Target Sequence 
TCGCAGATGCCGAGGTGGTTCACTGGCGCCGCCGACTACCGCCTCGGCGGCCGGATTCTCGGGGTCCGGTGCAACCTGAG
GTACGAGGTCGATCGCTTCTTCCTAGAAAGCAACGAGACGATCAAGATTCATATGCCAAAACAGAAAGGGGGCATGAGCA
AAACGGATATCGCATTGATCACCATTTCTGGAGTTGTTACTCCTGTTCTTCCTTTGATTCTAATTGGATTCATCGTAAAG
AAAATACGAGATTGCAAGCTAAGAAGAGAATTAGGTGACTGGGAGAAGACCGTTACCGAAGAAATTGATGAAAGGTTTTC
ACTTTATCCTTTCTCCATGATAAGAGATGCCACAGAAAATTTCTCAGCAGAAAATAGACTTGGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23564.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis