Browse Element(s) Details


OsAffx.23568.1.S1_at

Description tigr:9629.m03697
TID=OsAffx.23568.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3891011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38890OsAffx.23566.1.S1_at10/111+22148428..22153078hypothetical protein
LOC_Os01g38890OsAffx.29326.1.S1_at2/111+22148428..22153078hypothetical protein
LOC_Os01g38900OsAffx.23567.1.S1_at11/111+22164473..22172947Protein kinase domain containing protein
LOC_Os01g38900Os.39431.1.S1_at1/111+22164473..22172947Protein kinase domain containing protein
LOC_Os01g38900Os.39431.1.S1_x_at1/111+22164473..22172947Protein kinase domain containing protein
LOC_Os01g38910OsAffx.23568.1.S1_at11/111+22174341..22174931hypothetical protein
LOC_Os01g38920NANA1+22178457..22179331retrotransposon protein, putative, unclassified
LOC_Os01g38930OsAffx.14826.2.S1_at1/111+22196795..22198314hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0031225cellular_componentanchored to membrane
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23568.1.S1_at--192--4471Chr01:22174809..22174833 (25 bp)
GCCGGAGGTGAACCCGCTATACTAC
LOC_Os01g38910
OsAffx.23568.1.S1_at--587--9271Chr01:22174772..22174796 (25 bp)
TCCGGTGGCCGCTACGGTCAAAACA
LOC_Os01g38910
OsAffx.23568.1.S1_at--788--3671Chr01:22174757..22174781 (25 bp)
GGTCAAAACACCACGTACGAGGACA
LOC_Os01g38910
OsAffx.23568.1.S1_at--425--7191Chr01:22174706..22174730 (25 bp)
GTCGGTGTGGCCAGGGTCTCCAACT
LOC_Os01g38910
OsAffx.23568.1.S1_at--219--2951Chr01:22174583..22174607 (25 bp)
AAGGCGTTCGAGAATGCCGTCGAGA
LOC_Os01g38910
OsAffx.23568.1.S1_at--1138--4151Chr01:22174556..22174580 (25 bp)
CGCCTCTTCTGCGACAGGTTCAGGG
LOC_Os01g38910
OsAffx.23568.1.S1_at--492--2111Chr01:22174543..22174567 (25 bp)
ACAGGTTCAGGGACGCCACGATCTA
LOC_Os01g38910
OsAffx.23568.1.S1_at--898--9611Chr01:22174537..22174561 (25 bp)
TCAGGGACGCCACGATCTACTACGA
LOC_Os01g38910
OsAffx.23568.1.S1_at--901--7471Chr01:22174452..22174476 (25 bp)
GTGGGTCGCGTGGAACATGAACAAC
LOC_Os01g38910
OsAffx.23568.1.S1_at--23--2511Chr01:22174439..22174463 (25 bp)
AACATGAACAACGTGACCGGCGCCG
LOC_Os01g38910
OsAffx.23568.1.S1_at--198--1611Chr01:22174381..22174405 (25 bp)
AGCTGATCAACAAGACCGCTGACTA
LOC_Os01g38910
Target Sequence 
GCCGGAGGTGAACCCGCTATACTACAACTGCAGCCTGTCCGGTGGCCGCTACGGTCAAAACACCACGTACGAGGACAACC
TCAAGGCGCTGGCCGCGCGGCTCGTCGGTGTGGCCAGGGTCTCCAACTTCGCCTCGCACACCGTCGGCAGCGCGCCGGAC
GCGGCGTACGGCATCGCGCTCTGCCGCGGCGACTACACCGGCGACGAGTGCGCCAACGGCCTCCGCAAGGCGTTCGAGAA
TGCCGTCGAGAACCGCCTCTTCTGCGACAGGTTCAGGGACGCCACGATCTACTACGACCAGTACATGCTCCGGTTCTCCG
GCGAGGACTTCCGGGCCAACCTAACGAACGCGCCGGCGTGGGTCGCGTGGAACATGAACAACGTGACCGGCGCCGGTGGC
GCCGCCAAGTTCGGCGGCCGCGTCATGGAGCTGATCAACAAGACCGCTGACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23568.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis