Browse Element(s) Details


Os.33387.1.S1_at

Description gb:AK100754.1
DB_XREF= gi:32985963
TID=Os.33387.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33387 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0038J17.26 (OSJNBa0038J17.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023118N06, full insert sequence.
FL= gb:AK100754.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1166011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11620Os.43491.1.S1_x_at11/111+6264242..6267574GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11629NANA1+6272410..6272696NA
LOC_Os01g11640OsAffx.11011.1.S1_at11/111+6274280..6274516hypothetical protein
LOC_Os01g11650Os.3850.3.S1_at11/111+6275322..6280450GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11650Os.3850.1.S1_a_at11/111+6275322..6280450GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11650Os.54974.1.S1_x_at1/111+6275322..6280450GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11660Os.33387.1.S1_at11/111+6285167..6289103GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11670Os.45963.1.S1_x_at2/111+6292793..6294136Serine carboxypeptidase family protein
LOC_Os01g11670Os.45963.1.S1_at2/111+6292793..6294136Serine carboxypeptidase family protein
LOC_Os01g11680OsAffx.25108.4.S1_s_at11/111+6295746..6298199transposon protein, putative, unclassified
LOC_Os01g11680OsAffx.25108.1.S1_x_at7/111+6295746..6298199transposon protein, putative, unclassified
LOC_Os01g11680OsAffx.6420.1.S1_at1/111+6295746..6298199transposon protein, putative, unclassified
LOC_Os01g11690OsAffx.22111.1.S1_x_at4/111+6300364..6300624hypothetical protein
LOC_Os01g11700Os.32925.2.S1_x_at11/111+6301604..6303407GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11700Os.32925.2.S1_at11/111+6301604..6303407GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11700Os.32925.1.S1_at11/111+6301604..6303407GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11704OsAffx.22109.1.S1_at7/111+6308736..6310451hypothetical protein
LOC_Os01g11704Os.52239.1.S1_at1/111+6308736..6310451hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33387.1.S1_at--938--2931Chr01:6288131..6288155 (25 bp)
AAGGCAGTGGTCGTTCCAGGGATAC
LOC_Os01g11660
Os.33387.1.S1_at--171--6491Chr01:6288151..6288175 (25 bp)
GATACCACCATTGGGATGCATGCCG
LOC_Os01g11660
Os.33387.1.S1_at--201--2531Chr01:6288179..6288203 (25 bp)
AACTTAGCGATGTTTCCCAGCACCG
LOC_Os01g11660
Os.33387.1.S1_at--362--6351Chr01:6288203..6288227 (25 bp)
GATCCAGCGGGCTACGAACCAGGCA
LOC_Os01g11660
Os.33387.1.S1_at--331--1111Chr01:6288259..6288283 (25 bp)
AGTGTATCACAACACGCTGCTACAG
LOC_Os01g11660
Os.33387.1.S1_at--592--6271Chr01:6288317..6288341 (25 bp)
GATGTCCGAGTTATCTATGCAGATT
LOC_Os01g11660
Os.33387.1.S1_at--744--3431Chr01:6288368..6288389 (22 bp)
CAGTCCCCTGGCACATTTGGTTTTA
LOC_Os01g11660
Os.33387.1.S1_at--701--4591Chr01:6288857..6288881 (25 bp)
GCGACGGTGTGCGAGGATCCATCCA
LOC_Os01g11660
Os.33387.1.S1_at--332--1811Chr01:6288881..6288905 (25 bp)
ACCCATTTGTTCTGGGATGGCCACA
LOC_Os01g11660
Os.33387.1.S1_at--258--1671Chr01:6288916..6288940 (25 bp)
AGCCTACCACTTCATTGCTGATGGC
LOC_Os01g11660
Os.33387.1.S1_at--401--3891Chr01:6288985..6289009 (25 bp)
CTGTCCTCCTTTCTAGCTTAAATTT
LOC_Os01g11660
Target Sequence 
AAGGCAGTGGTCGTTCCAGGGATACCACCATTGGGATGCATGCCGCCCAACTTAGCGATGTTTCCCAGCACCGATCCAGC
GGGCTACGAACCAGGCACCGGATGCCTGAGGCAATTCAACGAGATCGCAGTGTATCACAACACGCTGCTACAGGATGCCA
TCAAGAATGTCCAGAAAAACCACCCAGATGTCCGAGTTATCTATGCAGATTTCTTCACCCCGGTCATTCGAATCGTCCAG
TCCCCTGGCACATTTGGTTTTACCAGCGATATTTTGAGATGTTGCTGCGGTGGAGGTGGGAAGTACAACTTCAACATGAG
TGCTGGATGTGGCATGCCAGGCGCGACGGTGTGCGAGGATCCATCCACCCATTTGTTCTGGGATGGCCACATGACAGAGG
CAGCCTACCACTTCATTGCTGATGGCTGGCTAAACAGCATAAATGAATCCTAGATAAACTATGTTAGAATCTGTCCTCCT
TTCTAGCTTAAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33387.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis