Browse Element(s) Details


Os.45963.1.S1_at

Description gb:CB622963
DB_XREF= gi:29617951
DB_XREF=OSIIEa10F14.r
CLONE=OSIIEa10F14
TID=Os.45963.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.45963 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0038J17.27 (OSJNBa0038J17.27), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g116702/11Serine carboxypeptidase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11629NANA1+6272410..6272696NA
LOC_Os01g11640OsAffx.11011.1.S1_at11/111+6274280..6274516hypothetical protein
LOC_Os01g11650Os.3850.3.S1_at11/111+6275322..6280450GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11650Os.3850.1.S1_a_at11/111+6275322..6280450GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11650Os.54974.1.S1_x_at1/111+6275322..6280450GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11660Os.33387.1.S1_at11/111+6285167..6289103GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11670Os.45963.1.S1_x_at2/111+6292793..6294136Serine carboxypeptidase family protein
LOC_Os01g11670Os.45963.1.S1_at2/111+6292793..6294136Serine carboxypeptidase family protein
LOC_Os01g11680OsAffx.25108.4.S1_s_at11/111+6295746..6298199transposon protein, putative, unclassified
LOC_Os01g11680OsAffx.25108.1.S1_x_at7/111+6295746..6298199transposon protein, putative, unclassified
LOC_Os01g11680OsAffx.6420.1.S1_at1/111+6295746..6298199transposon protein, putative, unclassified
LOC_Os01g11690OsAffx.22111.1.S1_x_at4/111+6300364..6300624hypothetical protein
LOC_Os01g11700Os.32925.2.S1_x_at11/111+6301604..6303407GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11700Os.32925.2.S1_at11/111+6301604..6303407GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11700Os.32925.1.S1_at11/111+6301604..6303407GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11704OsAffx.22109.1.S1_at7/111+6308736..6310451hypothetical protein
LOC_Os01g11704Os.52239.1.S1_at1/111+6308736..6310451hypothetical protein
LOC_Os01g11710Os.10533.1.S1_at11/111+6315932..6319253GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004185molecular_functionserine carboxypeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45963.1.S1_at--707--1571Chr01:6293901..6293925 (25 bp)
AGCTCAAGTGGGACGGCCTGACCGC
LOC_Os01g11670
Os.45963.1.S1_at--231--9731Chr01:6293904..6293928 (25 bp)
TCAAGTGGGACGGCCTGACCGCCTT
LOC_Os01g11670
Os.45963.1.S1_at--59--7611Chr01:6294149..6294173 (25 bp)
GGGCACGGGCGGAGGCCTCATCTCT
NONE
Os.45963.1.S1_at--163--5251Chr01:6294202..6294226 (25 bp)
GAATCGAGCAGAGTATGAGCCAGTT
NONE
Os.45963.1.S1_at--35--531Chr01:6294204..6294228 (25 bp)
ATCGAGCAGAGTATGAGCCAGTTTG
NONE
Os.45963.1.S1_at--1026--4071Chr01:6294206..6294230 (25 bp)
CGAGCAGAGTATGAGCCAGTTTGGT
NONE
Os.45963.1.S1_at--215--1511Chr01:6294208..6294232 (25 bp)
AGCAGAGTATGAGCCAGTTTGGTAC
NONE
Os.45963.1.S1_at--1130--6911Chr01:6294214..6294238 (25 bp)
GTATGAGCCAGTTTGGTACAGCTTC
NONE
Os.45963.1.S1_at--856--9051NONE
TGCATAAACCCAGCATCACAACTTC
NONE
Os.45963.1.S1_at--872--4391Chr01:6294419..6294439 (21 bp)
GCCAAACATGCCCTACATTGAAGGA
NONE
Os.45963.1.S1_at--873--4371Chr01:6294420..6294557 (25 bp)
CCAAACATGCCCTACATTGAAGGAT
NONE
Target Sequence 
AGCTCAAGTGGGACGGCCTGACCGCCTTCCTCGTCGCCGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGGGTAC
GTGCAGCGCTCCGGCCCGCTCTCCCACGTCNTTGTCNACGGCGCCGGGCACCTCGTGCCGGCGGACAACGGCCGCGTGGC
GCAGGAGATGATCGAGGATTGGGTGTTGCAGGCGGGGCTATTCGGGCGCCACGGCGGCATGAAGCGCGCGGCNTGACTCC
GCACTCCGGGGCACGGGCGGAGGCCTCATCTCTCGCGGTGTCAAACTCTAATCTGATTTGAGAATCGAGCAGAGTATGAG
CCAGTTTGGTACAGCTTCAACTCCTCAATTTAACTCCAGGAGTTAGATCTGGAGTGGAGTTGTGAAGCTGCATAAACCCA
GCATCACAACTTCATTTTGTGAGAGAGCTCCACCCAACTCTACTCCCAGTTTTGGTGGAGCTGAAACTGTTTGGCTGAGC
TCCAGCTCCAGGAGGGGTGGAGCTGGAGCTGTGCCAAACATGCCCTACATTGAAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45963.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis