Browse Element(s) Details


Os.32925.1.S1_at

Description gb:AK102384.1
DB_XREF= gi:32987593
TID=Os.32925.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.32925 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0038J17.30 (OSJNBa0038J17.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033092C19, full insert sequence.
FL= gb:AK102384.1 gb:AK059318.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1170011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g265201/11hypothetical protein
LOC_Os12g165101/11hypothetical protein
LOC_Os03g225001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11650Os.3850.3.S1_at11/111+6275322..6280450GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11650Os.3850.1.S1_a_at11/111+6275322..6280450GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11650Os.54974.1.S1_x_at1/111+6275322..6280450GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11660Os.33387.1.S1_at11/111+6285167..6289103GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11670Os.45963.1.S1_x_at2/111+6292793..6294136Serine carboxypeptidase family protein
LOC_Os01g11670Os.45963.1.S1_at2/111+6292793..6294136Serine carboxypeptidase family protein
LOC_Os01g11680OsAffx.25108.4.S1_s_at11/111+6295746..6298199transposon protein, putative, unclassified
LOC_Os01g11680OsAffx.25108.1.S1_x_at7/111+6295746..6298199transposon protein, putative, unclassified
LOC_Os01g11680OsAffx.6420.1.S1_at1/111+6295746..6298199transposon protein, putative, unclassified
LOC_Os01g11690OsAffx.22111.1.S1_x_at4/111+6300364..6300624hypothetical protein
LOC_Os01g11700Os.32925.2.S1_x_at11/111+6301604..6303407GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11700Os.32925.2.S1_at11/111+6301604..6303407GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11700Os.32925.1.S1_at11/111+6301604..6303407GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11704OsAffx.22109.1.S1_at7/111+6308736..6310451hypothetical protein
LOC_Os01g11704Os.52239.1.S1_at1/111+6308736..6310451hypothetical protein
LOC_Os01g11710Os.10533.1.S1_at11/111+6315932..6319253GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11720OsAffx.32083.2.S1_x_at11/111+6324888..6330214Transposable element protein, putative, Transposase_24
LOC_Os01g11720OsAffx.22108.1.S1_at11/111+6324888..6330214Transposable element protein, putative, Transposase_24
LOC_Os01g11720OsAffx.32083.1.S1_at5/111+6324888..6330214Transposable element protein, putative, Transposase_24
LOC_Os01g11720OsAffx.32083.1.S1_x_at2/111+6324888..6330214Transposable element protein, putative, Transposase_24
LOC_Os01g11720OsAffx.32083.3.S1_x_at1/111+6324888..6330214Transposable element protein, putative, Transposase_24

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32925.1.S1_at--147--7491Chr01:6303130..6303154 (25 bp)
GTGGGCCTTCTCGTGGTCGTCTCTT
LOC_Os01g11700
Os.32925.1.S1_at--209--7811Chr01:6303144..6303168 (25 bp)
GGTCGTCTCTTTACATGTTGGTAGT
LOC_Os01g11700
Os.32925.1.S1_at--425--6471Chr01:6303239..6303263 (25 bp)
GATACAACACATCCCTTAACTTATA
LOC_Os01g11700
Os.32925.1.S1_at--676--2371Chr01:6303264..6303288 (25 bp)
AAACTGTACAGAAGAGGTCCCTCGA
LOC_Os01g11700
Os.32925.1.S1_at--1149--10110Chr12:773938..774250 (25 bp)
AGGTCCCTCGACAGTATTGTGGCCG
NONE
Os.32925.1.S1_at--1100--4074Chr03:17130319..17130339 (21 bp)
CGACAGTATTGTGGCCGGTTTTGGA
NONE
Os.32925.1.S1_at--268--8431Chr01:6303298..6303322 (25 bp)
GGCCGGTTTTGGATGATGTTGCATA
LOC_Os01g11700
Os.32925.1.S1_at--674--8871Chr01:6303311..6303335 (25 bp)
TGATGTTGCATATACGTGGCTCCCT
LOC_Os01g11700
Os.32925.1.S1_at--99--2323Chr12:25499344..25499365 (22 bp)
ATATACGTGGCTCCCTTTGACTAGG
NONE
Os.32925.1.S1_at--583--8495Chr10:15909939..15909963 (25 bp)
TGGCTCCCTTTGACTAGGTCCTCAT
NONE
Os.32925.1.S1_at--1112--10733Chr05:22668273..22668308 (25 bp)
TTGACGTGGCGTTTTGATCCGAAAA
NONE
Target Sequence 
GTGGGCCTTCTCGTGGTCGTCTCTTTACATGTTGGTAGTAGGAATAAGTTCACTCCAGGTCCCTCAATTTGTCGNCCAGT
CTGATTTTCATCCTCAGNGCAGAAAACCGGATACAACACATCCCTTAACTTATAAAACTGTACAGAAGAGGTCCCTCGAC
AGTATTGTGGCCGGTTTTGGATGATGTTGCATATACGTGGCTCCCTTTGACTAGGTCCTCATCCCACGTGGCATTGACGT
GGCGTTTTGATCCGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32925.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis