Browse Element(s) Details


Os.10533.1.S1_at

Description gb:AK061118.1
DB_XREF= gi:32971136
TID=Os.10533.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10533 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-207-F05, full insert sequence.
FL= gb:AK061118.1 gb:AK059088.1 gb:AK119642.1 gb:AK119598.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1171011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11670Os.45963.1.S1_x_at2/111+6292793..6294136Serine carboxypeptidase family protein
LOC_Os01g11670Os.45963.1.S1_at2/111+6292793..6294136Serine carboxypeptidase family protein
LOC_Os01g11680OsAffx.25108.4.S1_s_at11/111+6295746..6298199transposon protein, putative, unclassified
LOC_Os01g11680OsAffx.25108.1.S1_x_at7/111+6295746..6298199transposon protein, putative, unclassified
LOC_Os01g11680OsAffx.6420.1.S1_at1/111+6295746..6298199transposon protein, putative, unclassified
LOC_Os01g11690OsAffx.22111.1.S1_x_at4/111+6300364..6300624hypothetical protein
LOC_Os01g11700Os.32925.2.S1_x_at11/111+6301604..6303407GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11700Os.32925.2.S1_at11/111+6301604..6303407GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11700Os.32925.1.S1_at11/111+6301604..6303407GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11704OsAffx.22109.1.S1_at7/111+6308736..6310451hypothetical protein
LOC_Os01g11704Os.52239.1.S1_at1/111+6308736..6310451hypothetical protein
LOC_Os01g11710Os.10533.1.S1_at11/111+6315932..6319253GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11720OsAffx.32083.2.S1_x_at11/111+6324888..6330214Transposable element protein, putative, Transposase_24
LOC_Os01g11720OsAffx.22108.1.S1_at11/111+6324888..6330214Transposable element protein, putative, Transposase_24
LOC_Os01g11720OsAffx.32083.1.S1_at5/111+6324888..6330214Transposable element protein, putative, Transposase_24
LOC_Os01g11720OsAffx.32083.1.S1_x_at2/111+6324888..6330214Transposable element protein, putative, Transposase_24
LOC_Os01g11720OsAffx.32083.3.S1_x_at1/111+6324888..6330214Transposable element protein, putative, Transposase_24
LOC_Os01g11730Os.12340.1.S1_at11/111+6337638..6341122GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10533.1.S1_at--107--9511Chr01:6318880..6318904 (25 bp)
TCTCGACCTGGTGTTAGCTGCTGCT
LOC_Os01g11710
Os.10533.1.S1_at--148--10271Chr01:6318974..6318998 (25 bp)
TTTGACAGTGTGTGGGCTTTGGCTA
LOC_Os01g11710
Os.10533.1.S1_at--195--7591Chr01:6318987..6319011 (25 bp)
GGGCTTTGGCTACTTGAGTCTCCAG
LOC_Os01g11710
Os.10533.1.S1_at--1132--6091Chr01:6319002..6319026 (25 bp)
GAGTCTCCAGGCACAGTACAGTATG
LOC_Os01g11710
Os.10533.1.S1_at--858--2131Chr01:6319019..6319043 (25 bp)
ACAGTATGTCTGTCGAGTGTCATCA
LOC_Os01g11710
Os.10533.1.S1_at--562--4071Chr01:6319032..6319056 (25 bp)
CGAGTGTCATCAGCTTTGGGCGTGA
LOC_Os01g11710
Os.10533.1.S1_at--654--7371Chr01:6319053..6319077 (25 bp)
GTGACTGTGTCCGTGCTACTTTTGA
LOC_Os01g11710
Os.10533.1.S1_at--153--3271Chr01:6319109..6319133 (25 bp)
CAACTGCACAAACCTTTCTTTCATG
LOC_Os01g11710
Os.10533.1.S1_at--712--3671Chr01:6319126..6319150 (25 bp)
CTTTCATGTGTTACGTCTGGATTTC
LOC_Os01g11710
Os.10533.1.S1_at--302--6831Chr01:6319207..6319231 (25 bp)
GTTTCAGAAACATACGGCGTGGCAT
LOC_Os01g11710
Os.10533.1.S1_at--96--1931Chr01:6319220..6319244 (25 bp)
ACGGCGTGGCATACACCAGTCAAAT
LOC_Os01g11710
Target Sequence 
TCTCGACCTGGTGTTAGCTGCTGCTGCTGCTGCTGCACTCTGCAATGTAAACTGATCTGTAATGTAGTGATATGAGCTAG
TGGTGGTTTTGAGTTTTGACAGTGTGTGGGCTTTGGCTACTTGAGTCTCCAGGCACAGTACAGTATGTCTGTCGAGTGTC
ATCAGCTTTGGGCGTGACTGTGTCCGTGCTACTTTTGACTTTGCAAGTACTGAATTATAGTACTCAGCACAACTGCACAA
ACCTTTCTTTCATGTGTTACGTCTGGATTTCACGAGACGAGTTGAAATCAGGCGGTATATATATATACGTCTGGATTTCA
GAACAATTAGTTTCAGAAACATACGGCGTGGCATACACCAGTCAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10533.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis