Browse Element(s) Details


Os.12340.1.S1_at

Description gb:AK058429.1
DB_XREF= gi:32968447
TID=Os.12340.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12340 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-015-E09, full insert sequence.
FL= gb:AK058429.1 gb:AK104443.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1173011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11710Os.10533.1.S1_at11/111+6315932..6319253GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11720OsAffx.32083.2.S1_x_at11/111+6324888..6330214Transposable element protein, putative, Transposase_24
LOC_Os01g11720OsAffx.22108.1.S1_at11/111+6324888..6330214Transposable element protein, putative, Transposase_24
LOC_Os01g11720OsAffx.32083.1.S1_at5/111+6324888..6330214Transposable element protein, putative, Transposase_24
LOC_Os01g11720OsAffx.32083.1.S1_x_at2/111+6324888..6330214Transposable element protein, putative, Transposase_24
LOC_Os01g11720OsAffx.32083.3.S1_x_at1/111+6324888..6330214Transposable element protein, putative, Transposase_24
LOC_Os01g11730Os.12340.1.S1_at11/111+6337638..6341122GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11740Os.31301.1.S1_at10/111+6349384..6355142GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11750Os.6097.2.S1_x_at1/111+6358328..6360259GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11760OsAffx.22107.1.S1_x_at11/111+6361865..6363859GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g11760OsAffx.22107.2.S1_x_at6/111+6361865..6363859GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g11770NANA1+6364840..6365319hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12340.1.S1_at--276--2591Chr01:6340763..6340787 (25 bp)
AACGATCTGACGAAGGAAACCCCAT
LOC_Os01g11730
Os.12340.1.S1_at--992--8091Chr01:6340777..6340801 (25 bp)
GGAAACCCCATCCAAATGGCTACGT
LOC_Os01g11730
Os.12340.1.S1_at--1045--2291Chr01:6340790..6340814 (25 bp)
AAATGGCTACGTCGATGCCTGCCTC
LOC_Os01g11730
Os.12340.1.S1_at--972--8831Chr01:6340819..6340843 (25 bp)
TGATACGCTCTCCTTTTGAGTCACT
LOC_Os01g11730
Os.12340.1.S1_at--951--7091Chr01:6340838..6340862 (25 bp)
GTCACTTTGTCTCTGTTATTCTTAA
LOC_Os01g11730
Os.12340.1.S1_at--166--10491Chr01:6340859..6340883 (25 bp)
TTAATCCAAGAGTACCCCAGCTGTT
LOC_Os01g11730
Os.12340.1.S1_at--19--4751Chr01:6340878..6340902 (25 bp)
GCTGTTAATTGTATATGCTCCTTTA
LOC_Os01g11730
Os.12340.1.S1_at--735--7191Chr01:6340934..6340958 (25 bp)
GTCGGAGCTGCTTCATCGATTGCGA
LOC_Os01g11730
Os.12340.1.S1_at--349--4071Chr01:6340988..6341012 (25 bp)
CGAGTCTGAGTAGTTGCGTTGTTCT
LOC_Os01g11730
Os.12340.1.S1_at--1005--9071Chr01:6341026..6341050 (25 bp)
TGCTTTCTGTGTGGTTTTTGCTGGT
LOC_Os01g11730
Os.12340.1.S1_at--711--4251Chr01:6341065..6341089 (25 bp)
CCGTGTGGTTGTATGGTTCTGTGCA
LOC_Os01g11730
Target Sequence 
AACGATCTGACGAAGGAAACCCCATCCAAATGGCTACGTCGATGCCTGCCTCTTTCTGATACGCTCTCCTTTTGAGTCAC
TTTGTCTCTGTTATTCTTAATCCAAGAGTACCCCAGCTGTTAATTGTATATGCTCCTTTAAAAAGGAGTCCATAAGTGAC
AGTTACTGGAAGTCGGAGCTGCTTCATCGATTGCGATGAGTTTGGCAGCGATATATAACCGGTGACGAGTCTGAGTAGTT
GCGTTGTTCTGGGGTTTTGCTTATGCTTTCTGTGTGGTTTTTGCTGGTTTTTCATAAATGAACCGTGTGGTTGTATGGTT
CTGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12340.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis