Browse Element(s) Details


OsAffx.22107.1.S1_x_at

Description gb:NM_188456.1
DB_XREF= gi:34903995
TID=OsAffx.22107.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1176011/11GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g117906/11GDSL-like Lipase/Acylhydrolase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11730Os.12340.1.S1_at11/111+6337638..6341122GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11740Os.31301.1.S1_at10/111+6349384..6355142GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11750Os.6097.2.S1_x_at1/111+6358328..6360259GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11760OsAffx.22107.1.S1_x_at11/111+6361865..6363859GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g11760OsAffx.22107.2.S1_x_at6/111+6361865..6363859GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g11770NANA1+6364840..6365319hypothetical protein
LOC_Os01g11780OsAffx.11013.2.S1_s_at11/111+6366221..6366868hypothetical protein
LOC_Os01g11790OsAffx.22107.4.S1_at11/111+6374063..6378639GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g11790OsAffx.22107.2.S1_x_at10/111+6374063..6378639GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g11790OsAffx.22107.1.S1_x_at6/111+6374063..6378639GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g11800OsAffx.23206.1.S1_x_at11/111+6379683..6380489hypothetical protein
LOC_Os01g11800OsAffx.26758.1.S1_x_at2/111+6379683..6380489hypothetical protein
LOC_Os01g11810Os.47366.1.A1_x_at11/111+6384493..6388269expressed protein
LOC_Os01g11810Os.3875.1.S1_at10/111+6384493..6388269expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22107.1.S1_x_at--93--4251Chr01:6362622..6362646 (25 bp)
CCGGGAAAACCGTCGAGCAGCTTAT
LOC_Os01g11760
OsAffx.22107.1.S1_x_at--1041--1551Chr01:6362640..6362664 (25 bp)
AGCTTATCCCCTACGTGCCAAAGGT
LOC_Os01g11760
OsAffx.22107.1.S1_x_at--1139--4391Chr01:6362656..6362680 (25 bp)
GCCAAAGGTCGTCGGAGCCATCTCC
LOC_Os01g11760
OsAffx.22107.1.S1_x_at--1162--552Chr01:6375111..6375135 (25 bp)
ATCCTGACGCTGTACGCGAGCAAGA
LOC_Os01g11790
OsAffx.22107.1.S1_x_at--126--1832Chr01:6375151..6375175 (25 bp)
ACGCGCGCGGCTGCCTGAAGAAGCA
LOC_Os01g11790
OsAffx.22107.1.S1_x_at--1095--2192Chr01:6375196..6375220 (25 bp)
ACAACTCGGCGCTGTTCGAGGCGGT
LOC_Os01g11790
OsAffx.22107.1.S1_x_at--512--8832Chr01:6375229..6375253 (25 bp)
TGAGGCACAGGTACCCTTGGGTGAA
LOC_Os01g11790
OsAffx.22107.1.S1_x_at--629--7712Chr01:6375247..6375271 (25 bp)
GGGTGAAGATCGTCTACGCCGACTA
LOC_Os01g11790
OsAffx.22107.1.S1_x_at--1104--2012Chr01:6375271..6375295 (25 bp)
ACTACAAGCCGGTGATCGACTTCAT
LOC_Os01g11790
OsAffx.22107.1.S1_x_at--638--5691Chr01:6363047..6363071 (25 bp)
GACTTCATCAAGAAACCGTCCAGAT
LOC_Os01g11760
OsAffx.22107.1.S1_x_at--637--1251Chr01:6363255..6363641 (25 bp)
AGATTCGGGTTCAGTGCCTCGTCGA
LOC_Os01g11760
Target Sequence 
CCGGGAAAACCGTCGAGCAGCTTATCCCCTACGTGCCAAAGGTCGTCGGAGCCATCTCCGCCGGCATCGAGGCGGTGATA
AAGGAAGGGGCGGTGCAGGTGGTGGTGCCGGGGGAGCTGCCCAACGGCTGCGTGCCCATCATCCTGACGCTGTACGCGAG
CAAGAGCAGAGGCGACTACGACGCGCGCGGCTGCCTGAAGAAGCAGAACGCGCTCGCGCGCTACCACAACTCGGCGCTGT
TCGAGGCGGTGTCGCGGCTGAGGCACAGGTACCCTTGGGTGAAGATCGTCTACGCCGACTACTACAAGCCGGTGATCGAC
TTCATCAAGAAACCGTCCAGATTCGGGTTCAGTGCCTCGTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22107.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis