Browse Element(s) Details


OsAffx.26758.1.S1_x_at

Description tigr:9633.m00558
TID=OsAffx.26758.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0637011/11hypothetical protein
LOC_Os01g118002/11hypothetical protein
LOC_Os07g404342/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06330Os.7818.1.S1_at11/115+3219317..3223219HIRA-interacting protein 5, putative, expressed
LOC_Os05g06340Os.7834.1.S1_at11/115+3223222..3225521GATA zinc finger family protein, expressed
LOC_Os05g06340OsAffx.22626.1.S1_s_at11/115+3223222..3225521GATA zinc finger family protein, expressed
LOC_Os05g06340Os.32947.2.S1_at1/115+3223222..3225521GATA zinc finger family protein, expressed
LOC_Os05g06350Os.4378.2.S2_a_at11/115+3229100..3234052Importin alpha-1b subunit, putative, expressed
LOC_Os05g06360Os.46003.1.A1_x_at11/115+3235590..3240846D8Ertd354e protein, putative, expressed
LOC_Os05g06360Os.5541.1.A1_at11/115+3235590..3240846D8Ertd354e protein, putative, expressed
LOC_Os05g06360Os.46003.1.A1_at10/115+3235590..3240846D8Ertd354e protein, putative, expressed
LOC_Os05g06370OsAffx.26758.1.S1_x_at11/115+3241334..3242071hypothetical protein
LOC_Os05g06370OsAffx.23206.1.S1_x_at2/115+3241334..3242071hypothetical protein
LOC_Os05g06380OsAffx.26759.1.S1_x_at11/115+3247232..3248632Transferase family protein, expressed
LOC_Os05g06390NANA5+3248763..3254952retrotransposon protein, putative, unclassified
LOC_Os05g06400Os.10626.4.A1_s_at11/115+3261886..3262317hypothetical protein
LOC_Os05g06400Os.40531.1.A1_x_at3/115+3261886..3262317hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26758.1.S1_x_at--337--6731Chr05:3241437..3241461 (25 bp)
GTTTCGGCAAAACAAAGCCACCAAT
LOC_Os05g06370
OsAffx.26758.1.S1_x_at--733--2191Chr05:3241426..3241450 (25 bp)
ACAAAGCCACCAATATCACAGTTAT
LOC_Os05g06370
OsAffx.26758.1.S1_x_at--857--2651Chr05:3241423..3241447 (25 bp)
AAGCCACCAATATCACAGTTATCAT
LOC_Os05g06370
OsAffx.26758.1.S1_x_at--604--4411Chr05:3241421..3241445 (25 bp)
GCCACCAATATCACAGTTATCATTA
LOC_Os05g06370
OsAffx.26758.1.S1_x_at--876--1216Chr12:24529689..24529713 (25 bp)
AGTTATCATTAAATCTCTGCACCAA
NONE
OsAffx.26758.1.S1_x_at--206--10436Chr12:24529691..24529714 (24 bp)
TTATCATTAAATCTCTGCACCAACC
NONE
OsAffx.26758.1.S1_x_at--766--3171Chr05:3241379..3241403 (25 bp)
CAACCTTCGGCGAGCGATTAATTTT
LOC_Os05g06370
OsAffx.26758.1.S1_x_at--369--2591Chr05:3241378..3241402 (25 bp)
AACCTTCGGCGAGCGATTAATTTTG
LOC_Os05g06370
OsAffx.26758.1.S1_x_at--664--4311Chr05:3241376..3241400 (25 bp)
CCTTCGGCGAGCGATTAATTTTGAA
LOC_Os05g06370
OsAffx.26758.1.S1_x_at--6--3571Chr05:3241375..3241399 (25 bp)
CTTCGGCGAGCGATTAATTTTGAAG
LOC_Os05g06370
OsAffx.26758.1.S1_x_at--120--10611Chr05:3241374..3241398 (25 bp)
TTCGGCGAGCGATTAATTTTGAAGA
LOC_Os05g06370
Target Sequence 
GTTTCGGCAAAACAAAGCCACCAATATCACAGTTATCATTAAATCTCTGCACCAACCTCAACCTTCGGCGAGCGATTAAT
TTTGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26758.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis