Browse Element(s) Details


Os.4378.2.S2_a_at

Description gb:AK100133.1
DB_XREF= gi:32985342
TID=Os.4378.2
CNT=96
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4378 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1156H12.22 (B1156H12.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023010D07, full insert sequence.
FL= gb:AK067529.1 gb:AK100133.1 gb:AK106151.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0635011/11Importin alpha-1b subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06300Os.32913.1.S1_at11/115+3198034..3206141Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a, putative, expressed
LOC_Os05g06300Os.54503.1.A1_at5/115+3198034..3206141Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a, putative, expressed
LOC_Os05g06300Os.54371.1.S1_x_at1/115+3198034..3206141Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a, putative, expressed
LOC_Os05g06310Os.12160.1.S1_at11/115+3208318..321093960S ribosomal protein L18, putative, expressed
LOC_Os05g06320Os.7454.1.S1_a_at11/115+3211013..3215401Ethylene receptor, putative, expressed
LOC_Os05g06330Os.7818.1.S1_at11/115+3219317..3223219HIRA-interacting protein 5, putative, expressed
LOC_Os05g06340Os.7834.1.S1_at11/115+3223222..3225521GATA zinc finger family protein, expressed
LOC_Os05g06340OsAffx.22626.1.S1_s_at11/115+3223222..3225521GATA zinc finger family protein, expressed
LOC_Os05g06340Os.32947.2.S1_at1/115+3223222..3225521GATA zinc finger family protein, expressed
LOC_Os05g06350Os.4378.2.S2_a_at11/115+3229100..3234052Importin alpha-1b subunit, putative, expressed
LOC_Os05g06360Os.46003.1.A1_x_at11/115+3235590..3240846D8Ertd354e protein, putative, expressed
LOC_Os05g06360Os.5541.1.A1_at11/115+3235590..3240846D8Ertd354e protein, putative, expressed
LOC_Os05g06360Os.46003.1.A1_at10/115+3235590..3240846D8Ertd354e protein, putative, expressed
LOC_Os05g06370OsAffx.26758.1.S1_x_at11/115+3241334..3242071hypothetical protein
LOC_Os05g06370OsAffx.23206.1.S1_x_at2/115+3241334..3242071hypothetical protein
LOC_Os05g06380OsAffx.26759.1.S1_x_at11/115+3247232..3248632Transferase family protein, expressed
LOC_Os05g06390NANA5+3248763..3254952retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0005635cellular_componentnuclear envelope
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4378.2.S2_a_at--933--5071Chr05:3230068..3230092 (25 bp)
GCAGCCCAATGTTCCATCGGGTGGA
LOC_Os05g06350
Os.4378.2.S2_a_at--1140--2991Chr05:3229925..3229949 (25 bp)
AATGATGTACCACTGTTCCTTAGCT
LOC_Os05g06350
Os.4378.2.S2_a_at--520--911Chr05:3229826..3229850 (25 bp)
AGGCAGTCGTAATGTCAGTCCCAGT
LOC_Os05g06350
Os.4378.2.S2_a_at--1007--411Chr05:3229789..3229813 (25 bp)
ATCATCGCCAGTGGTGCAGCTTGGT
LOC_Os05g06350
Os.4378.2.S2_a_at--861--7811Chr05:3229760..3229784 (25 bp)
GGTCAGTCTTGAAGGTCATCCAGTT
LOC_Os05g06350
Os.4378.2.S2_a_at--376--10871Chr05:3229737..3229761 (25 bp)
TTGGATTTACTTGGGCTCTGTCTCA
LOC_Os05g06350
Os.4378.2.S2_a_at--538--9471Chr05:3229721..3229745 (25 bp)
TCTGTCTCACCTGTGGTGGGAGCAT
LOC_Os05g06350
Os.4378.2.S2_a_at--98--1331Chr05:3229657..3229681 (25 bp)
AGAGTTACCAGTTGGCTTTTGCCTC
LOC_Os05g06350
Os.4378.2.S2_a_at--123--8311Chr05:3229644..3229668 (25 bp)
GGCTTTTGCCTCCTATATAGCATGA
LOC_Os05g06350
Os.4378.2.S2_a_at--955--6811Chr05:3229548..3229572 (25 bp)
GTTTTTGTCAAGTCTCTATGTGCTG
LOC_Os05g06350
Os.4378.2.S2_a_at--390--9131Chr05:3229450..3229474 (25 bp)
TGCTGGTCTGTCTATTCATTGGTTT
LOC_Os05g06350
Target Sequence 
GCAGCCCAATGTTCCATCGGGTGGATTCAACTTTGGCTGAAGATACCTATCTGGAATGATGTACCACTGTTCCTTAGCTA
CTTGCTTGGGGCTAGTCAGAGTTGGGGGAGTCTTGTCGTTGGAGTCTTGGTTGGGTCCTGGCGGTCTGGTCTCAGGCAGT
CGTAATGTCAGTCCCAGTCCTTGGGCTTGCATCATCGCCAGTGGTGCAGCTTGGTCAGTGGTCAGTCTTGAAGGTCATCC
AGTTGGATTTACTTGGGCTCTGTCTCACCTGTGGTGGGAGCATGGGGGAGAGGGCGTCCAGAGCCGCAGGTGTTGTCGGG
AGAGAGTTACCAGTTGGCTTTTGCCTCCTATATAGCATGAATGAATTATATTATCATCTGTTTTGAGGTAAAAAGAACCT
TGAAAGATAGGGTTTATTCATGGTTGTGTCAGTTTTTGTCAAGTCTCTATGTGCTGTATTAACATGTCAGAAGAGTATTG
GCACAACTTATAAACATCAAATAGCAACTGGGTTTTTGGTGGAGTCCCATGCTGGTCTGTCTATTCATTGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4378.2.S2_a_at     

Putative homologies in rice

Putative homologies in arabidopsis