Browse Element(s) Details


Os.32913.1.S1_at

Description gb:AK102420.1
DB_XREF= gi:32987629
TID=Os.32913.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32913 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative tetrafunctional protein for glyoxysomal fatty acid beta-oxidation (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033093D14, full insert sequence.
FL= gb:AK102420.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0630011/11Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06270Os.8381.1.S1_at11/115+3167813..3173736VIP2 protein, putative, expressed
LOC_Os05g06280Os.8608.2.S1_x_at11/115+3181348..3192111kinesin motor family protein, putative, expressed
LOC_Os05g06280OsAffx.26757.1.S1_at11/115+3181348..3192111kinesin motor family protein, putative, expressed
LOC_Os05g06280Os.8608.1.S1_at11/115+3181348..3192111kinesin motor family protein, putative, expressed
LOC_Os05g06280Os.9766.1.S1_at11/115+3181348..3192111kinesin motor family protein, putative, expressed
LOC_Os05g06280Os.8608.1.S1_a_at11/115+3181348..3192111kinesin motor family protein, putative, expressed
LOC_Os05g06290Os.11275.1.S1_at11/115+3192180..3194361expressed protein
LOC_Os05g06300Os.32913.1.S1_at11/115+3198034..3206141Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a, putative, expressed
LOC_Os05g06300Os.54503.1.A1_at5/115+3198034..3206141Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a, putative, expressed
LOC_Os05g06300Os.54371.1.S1_x_at1/115+3198034..3206141Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a, putative, expressed
LOC_Os05g06310Os.12160.1.S1_at11/115+3208318..321093960S ribosomal protein L18, putative, expressed
LOC_Os05g06320Os.7454.1.S1_a_at11/115+3211013..3215401Ethylene receptor, putative, expressed
LOC_Os05g06330Os.7818.1.S1_at11/115+3219317..3223219HIRA-interacting protein 5, putative, expressed
LOC_Os05g06340Os.7834.1.S1_at11/115+3223222..3225521GATA zinc finger family protein, expressed
LOC_Os05g06340OsAffx.22626.1.S1_s_at11/115+3223222..3225521GATA zinc finger family protein, expressed
LOC_Os05g06340Os.32947.2.S1_at1/115+3223222..3225521GATA zinc finger family protein, expressed
LOC_Os05g06350Os.4378.2.S2_a_at11/115+3229100..3234052Importin alpha-1b subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006631biological_processfatty acid metabolism
GO:0006635biological_processfatty acid beta-oxidation
GO:0007275biological_processdevelopment
GO:0008152biological_processmetabolism
GO:0009845biological_processseed germination
GO:0009908biological_processflower development
GO:0005777cellular_componentperoxisome
GO:0003824molecular_functioncatalytic activity
GO:0004300molecular_functionenoyl-CoA hydratase activity
GO:0008691molecular_function3-hydroxybutyryl-CoA dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32913.1.S1_at--266--3071Chr05:3198876..3198900 (25 bp)
AATCTTCGGCATGGGATTTCCACCA
LOC_Os05g06300
Os.32913.1.S1_at--808--8431Chr05:3198570..3198594 (25 bp)
GGCCTTGCTCATACCTGTCAGAAAG
LOC_Os05g06300
Os.32913.1.S1_at--445--5051Chr05:3198414..3198565 (25 bp)
GCAGAAGGTGTTCCTCTGAGCTCCA
LOC_Os05g06300
Os.32913.1.S1_at--370--4391Chr05:3198375..3198399 (25 bp)
GCCAAGGCCCGGATGTGAGTCTGAT
LOC_Os05g06300
Os.32913.1.S1_at--713--8891Chr05:3198360..3198384 (25 bp)
TGAGTCTGATCTTACTGCCATCATG
LOC_Os05g06300
Os.32913.1.S1_at--1000--3551Chr05:3198342..3198366 (25 bp)
CATCATGTGTTTTCCAGCCGAGATT
LOC_Os05g06300
Os.32913.1.S1_at--557--3011Chr05:3198301..3198325 (25 bp)
AATGCAGCCTCAGTCAGAGTTTCAG
LOC_Os05g06300
Os.32913.1.S1_at--979--1331Chr05:3198286..3198310 (25 bp)
AGAGTTTCAGACTTCACTGGCTGCT
LOC_Os05g06300
Os.32913.1.S1_at--31--2791Chr05:3198146..3198170 (25 bp)
AAGAGAGACCAATTTACGCACAGAA
LOC_Os05g06300
Os.32913.1.S1_at--1090--671Chr05:3198080..3198104 (25 bp)
ATGACATACTACATGCAGCTCGGAT
LOC_Os05g06300
Os.32913.1.S1_at--181--3791Chr05:3198062..3198086 (25 bp)
CTCGGATTCTTATACGGCTGCTTAA
LOC_Os05g06300
Target Sequence 
AATCTTCGGCATGGGATTTCCACCATACAGGGGTGGCATCGTGTACTGGGCCGATTCCATCGGCGCAAAGCGCATTCACG
CANGGCTATCAGAGTGGGAGATGAAGCATGGCCAGTTGTTCAGGCCTTGCTCATACCTGTCAGAAAGGGCAGCAGAAGGT
GTTCCTCTGAGCTCCACCGCGAAGAACAATGCCAAGGCCCGGATGTGAGTCTGATCTTACTGCCATCATGTGTTTTCCAG
CCGAGATTGATGAAGAACAGTAATAATGCAGCCTCAGTCAGAGTTTCAGACTTCACTGGCTGCTGTGAAGTGTGGAGCAA
AGAGAGTCAGGAGATTGAATAACAGTATACAGTGTGTATTATCTAAAAAATAACAGTATATAGTGTGTATAGTGAGAAAC
CGTACGAAATGTGTATGAAAAGAGAGACCAATTTACGCACAGAATTCATATATGAATGTTAAAAAAATTCAGATCACTGG
ACGTGATGACATACTACATGCAGCTCGGATTCTTATACGGCTGCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32913.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis