Browse Element(s) Details


Os.12160.1.S1_at

Description gb:AK120877.1
DB_XREF= gi:37990500
TID=Os.12160.1
CNT=40
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12160 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cytoplasmic ribosomal protein L18 (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023027I12, full insert sequence.
FL= gb:AK102810.1 gb:AK061929.1 gb:AK120877.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0631011/1160S ribosomal protein L18, putative, expressed
LOC_Os03g105101/11Eukaryotic porin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06280Os.8608.2.S1_x_at11/115+3181348..3192111kinesin motor family protein, putative, expressed
LOC_Os05g06280OsAffx.26757.1.S1_at11/115+3181348..3192111kinesin motor family protein, putative, expressed
LOC_Os05g06280Os.8608.1.S1_at11/115+3181348..3192111kinesin motor family protein, putative, expressed
LOC_Os05g06280Os.9766.1.S1_at11/115+3181348..3192111kinesin motor family protein, putative, expressed
LOC_Os05g06280Os.8608.1.S1_a_at11/115+3181348..3192111kinesin motor family protein, putative, expressed
LOC_Os05g06290Os.11275.1.S1_at11/115+3192180..3194361expressed protein
LOC_Os05g06300Os.32913.1.S1_at11/115+3198034..3206141Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a, putative, expressed
LOC_Os05g06300Os.54503.1.A1_at5/115+3198034..3206141Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a, putative, expressed
LOC_Os05g06300Os.54371.1.S1_x_at1/115+3198034..3206141Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a, putative, expressed
LOC_Os05g06310Os.12160.1.S1_at11/115+3208318..321093960S ribosomal protein L18, putative, expressed
LOC_Os05g06320Os.7454.1.S1_a_at11/115+3211013..3215401Ethylene receptor, putative, expressed
LOC_Os05g06330Os.7818.1.S1_at11/115+3219317..3223219HIRA-interacting protein 5, putative, expressed
LOC_Os05g06340Os.7834.1.S1_at11/115+3223222..3225521GATA zinc finger family protein, expressed
LOC_Os05g06340OsAffx.22626.1.S1_s_at11/115+3223222..3225521GATA zinc finger family protein, expressed
LOC_Os05g06340Os.32947.2.S1_at1/115+3223222..3225521GATA zinc finger family protein, expressed
LOC_Os05g06350Os.4378.2.S2_a_at11/115+3229100..3234052Importin alpha-1b subunit, putative, expressed
LOC_Os05g06360Os.46003.1.A1_x_at11/115+3235590..3240846D8Ertd354e protein, putative, expressed
LOC_Os05g06360Os.5541.1.A1_at11/115+3235590..3240846D8Ertd354e protein, putative, expressed
LOC_Os05g06360Os.46003.1.A1_at10/115+3235590..3240846D8Ertd354e protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0006820biological_processanion transport
GO:0005739cellular_componentmitochondrion
GO:0005741cellular_componentmitochondrial outer membrane
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
GO:0008308molecular_functionvoltage-gated ion-selective channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12160.1.S1_at--216--7371Chr05:3210443..3210467 (25 bp)
GTGAGGCCGTCAGGCACTTTGGTAA
LOC_Os05g06310
Os.12160.1.S1_at--414--2031Chr05:3210458..3210482 (25 bp)
ACTTTGGTAAGGCTCCTGGTGTGCC
LOC_Os05g06310
Os.12160.1.S1_at--970--5411Chr05:3210495..3210519 (25 bp)
GAAGCCATATGTGCGCTCCAAGGGA
LOC_Os05g06310
Os.12160.1.S1_at--917--8151Chr05:3210548..3210572 (25 bp)
GGAACAGCCGTGGATTCAAGGTCTA
LOC_Os05g06310
Os.12160.1.S1_at--605--9731Chr05:3210563..3210587 (25 bp)
TCAAGGTCTAAGTCAGCTCCTGTTT
LOC_Os05g06310
Os.12160.1.S1_at--176--9671Chr05:3210575..3210599 (25 bp)
TCAGCTCCTGTTTGCAAGTGTTGCG
LOC_Os05g06310
Os.12160.1.S1_at--101--51Chr05:3210606..3210630 (25 bp)
ATTGTGCGACCGTTCTGTTTGAGCA
LOC_Os05g06310
Os.12160.1.S1_at--365--6931Chr05:3210645..3210669 (25 bp)
GTAGTCACTTCTCTACTGAGACTAG
LOC_Os05g06310
Os.12160.1.S1_at--1003--9971Chr05:3210718..3210742 (25 bp)
TACCTACCTACATGCGTTTGTGGGC
LOC_Os05g06310
Os.12160.1.S1_at--206--2853Chr05:3210819..3210843 (25 bp)
AAGTCATGGGCTCATGGCTTGCTGT
LOC_Os05g06310
Os.12160.1.S1_at--1117--2831Chr05:3210914..3210938 (25 bp)
AAGTCAATGCCTGAAGCCACTCAAC
LOC_Os05g06310
Target Sequence 
GTGAGGCCGTCAGGCACTTTGGTAAGGCTCCTGGTGTGCCGCACAGCCACACGAAGCCATATGTGCGCTCCAAGGGAAGG
AAGTTCGAGAAGGCCCGTGGCAGGAGGAACAGCCGTGGATTCAAGGTCTAAGTCAGCTCCTGTTTGCAAGTGTTGCGATC
GGCATTGTGCGACCGTTCTGTTTGAGCANATCGACAGTAATTAGTAGTCACTTCTCTACTGAGACTAGCAAAACTTAATT
GTGTCATTTCTGAAAGATATTTTGAAGGATCCTTTCTACCTACCTACATGCGTTTGTGGGCAAGAAGACAATGTTTTTTG
TTTCCTCTCTATTAGAGCTTGAAAATTTTCGCCTCCATTGCTCTCTTGGTGATAGTGAAGTCATGGGCTCATGGCTTGCT
GTCATGGTGAAATGATGGTTCAGCTCATGGCTGATGTGCTTGATTATGTGGGTTTCTGTGATGTTATTGCATAAGTCAAT
GCCTGAAGCCACTCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12160.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis