Browse Element(s) Details


Os.5541.1.A1_at

Description gb:AK066581.1
DB_XREF= gi:32976599
TID=Os.5541.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5541 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013070I02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013070I02, full insert sequence.
FL= gb:AK066581.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0636011/11D8Ertd354e protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06310Os.12160.1.S1_at11/115+3208318..321093960S ribosomal protein L18, putative, expressed
LOC_Os05g06320Os.7454.1.S1_a_at11/115+3211013..3215401Ethylene receptor, putative, expressed
LOC_Os05g06330Os.7818.1.S1_at11/115+3219317..3223219HIRA-interacting protein 5, putative, expressed
LOC_Os05g06340Os.7834.1.S1_at11/115+3223222..3225521GATA zinc finger family protein, expressed
LOC_Os05g06340OsAffx.22626.1.S1_s_at11/115+3223222..3225521GATA zinc finger family protein, expressed
LOC_Os05g06340Os.32947.2.S1_at1/115+3223222..3225521GATA zinc finger family protein, expressed
LOC_Os05g06350Os.4378.2.S2_a_at11/115+3229100..3234052Importin alpha-1b subunit, putative, expressed
LOC_Os05g06360Os.46003.1.A1_x_at11/115+3235590..3240846D8Ertd354e protein, putative, expressed
LOC_Os05g06360Os.5541.1.A1_at11/115+3235590..3240846D8Ertd354e protein, putative, expressed
LOC_Os05g06360Os.46003.1.A1_at10/115+3235590..3240846D8Ertd354e protein, putative, expressed
LOC_Os05g06370OsAffx.26758.1.S1_x_at11/115+3241334..3242071hypothetical protein
LOC_Os05g06370OsAffx.23206.1.S1_x_at2/115+3241334..3242071hypothetical protein
LOC_Os05g06380OsAffx.26759.1.S1_x_at11/115+3247232..3248632Transferase family protein, expressed
LOC_Os05g06390NANA5+3248763..3254952retrotransposon protein, putative, unclassified
LOC_Os05g06400Os.10626.4.A1_s_at11/115+3261886..3262317hypothetical protein
LOC_Os05g06400Os.40531.1.A1_x_at3/115+3261886..3262317hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5541.1.A1_at--153--591Chr05:3239871..3239895 (25 bp)
ATGCCTTTCAGCAAGCCTTTGTACA
LOC_Os05g06360
Os.5541.1.A1_at--34--5911Chr05:3239900..3239924 (25 bp)
GAGCTACATGCTACTAACCGGTGGG
LOC_Os05g06360
Os.5541.1.A1_at--294--2671Chr05:3240186..3240210 (25 bp)
AAGCCGTTCATCCTATTCCAGTGGA
LOC_Os05g06360
Os.5541.1.A1_at--806--8791Chr05:3240236..3240260 (25 bp)
TGTTCTTGCTGCTTGTGAGATCTTC
LOC_Os05g06360
Os.5541.1.A1_at--1064--8891Chr05:3240251..3240275 (25 bp)
TGAGATCTTCCCTACACTTGTGCAA
LOC_Os05g06360
Os.5541.1.A1_at--415--8471Chr05:3240567..3240591 (25 bp)
TGGCGTTCGTCGTCTTGGAGATCAT
LOC_Os05g06360
Os.5541.1.A1_at--570--8551Chr05:3240582..3240606 (25 bp)
TGGAGATCATCTTCTGGTGCCTGGC
LOC_Os05g06360
Os.5541.1.A1_at--1071--9031Chr05:3240607..3240631 (25 bp)
TGCTTGTTTCCTCCACATGAAAGGC
LOC_Os05g06360
Os.5541.1.A1_at--957--9991Chr05:3240647..3240671 (25 bp)
TAGCTGTAGAGCCATTCATTTCCCT
LOC_Os05g06360
Os.5541.1.A1_at--479--1091Chr05:3240718..3240742 (25 bp)
AGGGCCTTCCTTGTAAATCTTCTGA
LOC_Os05g06360
Os.5541.1.A1_at--706--3151Chr05:3240746..3240770 (25 bp)
AATTCTCTGTAAATGCACTTCCTCC
LOC_Os05g06360
Target Sequence 
ATGCCTTTCAGCAAGCCTTTGTACACGGTGAGCTACATGCTACTAACCGGTGGGGTATCTGGATTCCTGCTGTTGTTGCT
ATACTACATTGTTGATGTCATCAATATCAAGAAGCCGTTCATCCTATTCCAGTGGATGGGCATGAACGCGCTTATAGTGT
ATGTTCTTGCTGCTTGTGAGATCTTCCCTACACTTGTGCAAGGGTTCTATTGGAGATCACCTGAAAACAACCTGGTGGAT
TTGACTGAATCTCTGCTTCAGACAATCTTCCACTCCAAACGCTGGGGAACCTTGGCGTTCGTCGTCTTGGAGATCATCTT
CTGGTGCCTGGCTGCTTGTTTCCTCCACATGAAAGGCATATACTTGAAACTGTAGCTGTAGAGCCATTCATTTCCCTGCA
AAAACACATTTTCTGCAGAAAATGTTCTTTTTTGGCCCAAGCAAGGGCCTTCCTTGTAAATCTTCTGAAACAATTCTCTG
TAAATGCACTTCCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5541.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis