Browse Element(s) Details


Os.32947.2.S1_at

Description gb:NM_187414.1
DB_XREF= gi:34901913
GEN=OSJNBa0036M16.23
TID=Os.32947.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.32947 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative Cytochrome P450 (OSJNBa0036M16.23), mRNA.
PROD=putative Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3342011/11Cytochrome P450 family protein
LOC_Os05g063401/11GATA zinc finger family protein, expressed
LOC_Os07g335501/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33380OsAffx.28728.1.S1_at11/117+19955539..19956483hypothetical protein
LOC_Os07g33390Os.47752.1.S1_at9/117+19960426..19962128ATPase, AAA family protein, expressed
LOC_Os07g33390OsAffx.20433.1.S1_x_at2/117+19960426..19962128ATPase, AAA family protein, expressed
LOC_Os07g33400Os.23959.1.A1_x_at10/117+19963975..19968222hypothetical protein
LOC_Os07g33400Os.23959.1.A1_at5/117+19963975..19968222hypothetical protein
LOC_Os07g33400Os.55693.1.S1_at1/117+19963975..19968222hypothetical protein
LOC_Os07g33410OsAffx.1381.2.A1_at6/117+19968831..19972476ATPase, AAA family protein
LOC_Os07g33410OsAffx.20433.1.S1_x_at1/117+19968831..19972476ATPase, AAA family protein
LOC_Os07g33420Os.32947.2.S1_at11/117+19975950..19977736Cytochrome P450 family protein
LOC_Os07g33430NANA7+19978918..19979710hypothetical protein
LOC_Os07g33440Os.26830.1.S1_at11/117+19984018..19985974Cytochrome P450 family protein, expressed
LOC_Os07g33440Os.20627.3.S1_x_at2/117+19984018..19985974Cytochrome P450 family protein, expressed
LOC_Os07g33450NANA7+19987442..19994662retrotransposon protein, putative, unclassified
LOC_Os07g33460NANA7+19998290..19998619hypothetical protein
LOC_Os07g33470OsAffx.16541.1.S1_at11/117+20001785..20002951hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0016132biological_processbrassinosteroid biosynthesis
GO:0003700molecular_functiontranscription factor activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32947.2.S1_at--607--10511Chr07:19976225..19976249 (25 bp)
TTCACTGCACAAATTGTCACACATT
LOC_Os07g33420
Os.32947.2.S1_at--780--3171Chr07:19976214..19976238 (25 bp)
AATTGTCACACATTTGGACACTAAT
LOC_Os07g33420
Os.32947.2.S1_at--179--8131Chr07:19976199..19976223 (25 bp)
GGACACTAATTTTTTCGACGAGCCA
LOC_Os07g33420
Os.32947.2.S1_at--379--2011Chr07:19976195..19976219 (25 bp)
ACTAATTTTTTCGACGAGCCAAGCA
LOC_Os07g33420
Os.32947.2.S1_at--797--10371Chr07:19976188..19976212 (25 bp)
TTTTCGACGAGCCAAGCAAGTTTGA
LOC_Os07g33420
Os.32947.2.S1_at--571--4312Chr07:19976162..19976186 (25 bp)
CCTTCTAGATTTGATAACCTGTCTT
LOC_Os07g33420
Os.32947.2.S1_at--546--211Chr07:19976154..19976178 (25 bp)
ATTTGATAACCTGTCTTCGATCCCA
LOC_Os07g33420
Os.32947.2.S1_at--663--10632Chr07:20045785..20045804 (20 bp)
TTCGATCCCACCCTATTGCTTTGTT
LOC_Os07g33550
Os.32947.2.S1_at--874--4611Chr07:19976072..19976096 (25 bp)
GCGAGGACTGAGACATCGGTAGCTA
LOC_Os07g33420
Os.32947.2.S1_at--110--6771Chr07:19975999..19976023 (25 bp)
GTTACAGGAAAGATGCTACTCCGAT
LOC_Os07g33420
Os.32947.2.S1_at--885--2332Chr07:20032658..20032678 (21 bp)
AAAGATGCTACTCCGATGCCTGTTC
NONE
Target Sequence 
TTCACTGCACAAATTGTCACACATTTGGACACTAATTTTTTCGACGAGCCAAGCAAGTTTGANCCTTCTAGATTTGATAA
CCTGTCTTCGATCCCACCCTATTGCTTTGTTCCATTTGGGGGAGGTCCAAGAATGTGCCCCGGAAACGAGTTTGCGAGGA
CTGAGACATCGGTAGCTATGCACTACCTAGTGAGACAGTTCAGGTGGAAATTGTGCTGCAAAGAAGGTTACAGGAAAGAT
GCTACTCCGATGCCTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32947.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis