Browse Element(s) Details


Os.26830.1.S1_at

Description gb:AK105659.1
DB_XREF= gi:32990868
TID=Os.26830.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26830 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Cytochrome P450 (OSJNBa0036M16.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-200-G10, full insert sequence.
FL= gb:AK105659.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3344011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33390Os.47752.1.S1_at9/117+19960426..19962128ATPase, AAA family protein, expressed
LOC_Os07g33390OsAffx.20433.1.S1_x_at2/117+19960426..19962128ATPase, AAA family protein, expressed
LOC_Os07g33400Os.23959.1.A1_x_at10/117+19963975..19968222hypothetical protein
LOC_Os07g33400Os.23959.1.A1_at5/117+19963975..19968222hypothetical protein
LOC_Os07g33400Os.55693.1.S1_at1/117+19963975..19968222hypothetical protein
LOC_Os07g33410OsAffx.1381.2.A1_at6/117+19968831..19972476ATPase, AAA family protein
LOC_Os07g33410OsAffx.20433.1.S1_x_at1/117+19968831..19972476ATPase, AAA family protein
LOC_Os07g33420Os.32947.2.S1_at11/117+19975950..19977736Cytochrome P450 family protein
LOC_Os07g33430NANA7+19978918..19979710hypothetical protein
LOC_Os07g33440Os.26830.1.S1_at11/117+19984018..19985974Cytochrome P450 family protein, expressed
LOC_Os07g33440Os.20627.3.S1_x_at2/117+19984018..19985974Cytochrome P450 family protein, expressed
LOC_Os07g33450NANA7+19987442..19994662retrotransposon protein, putative, unclassified
LOC_Os07g33460NANA7+19998290..19998619hypothetical protein
LOC_Os07g33470OsAffx.16541.1.S1_at11/117+20001785..20002951hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0016132biological_processbrassinosteroid biosynthesis
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26830.1.S1_at--893--7751Chr07:19985535..19985559 (25 bp)
GGTGATGATGCACCATCTTGTCAGG
LOC_Os07g33440
Os.26830.1.S1_at--768--5071Chr07:19985544..19985568 (25 bp)
GCACCATCTTGTCAGGAAGTTCAGG
LOC_Os07g33440
Os.26830.1.S1_at--725--9151Chr07:19985633..19985657 (25 bp)
TGCCCATCGAAATCGAGCCGAGGAT
LOC_Os07g33440
Os.26830.1.S1_at--600--7931Chr07:19985654..19985678 (25 bp)
GGATTTCTCCTTGATCATAAGCCAA
LOC_Os07g33440
Os.26830.1.S1_at--781--691Chr07:19985707..19985731 (25 bp)
ATGAGCAATCACGACATGAATGTTG
LOC_Os07g33440
Os.26830.1.S1_at--945--7591Chr07:19985759..19985783 (25 bp)
GGGCAGCATGGCCATTGCAATTTTT
LOC_Os07g33440
Os.26830.1.S1_at--1004--9651Chr07:19985855..19985879 (25 bp)
TCAGCAAATTTGTCACTCATGTATG
LOC_Os07g33440
Os.26830.1.S1_at--1027--8731Chr07:19985865..19985889 (25 bp)
TGTCACTCATGTATGTGGCATTTGA
LOC_Os07g33440
Os.26830.1.S1_at--893--792Chr07:19985877..19985901 (25 bp)
ATGTGGCATTTGAGATGACGCTACT
LOC_Os07g33440
Os.26830.1.S1_at--962--8891Chr07:19985887..19985911 (25 bp)
TGAGATGACGCTACTCAACTATGTG
LOC_Os07g33440
Os.26830.1.S1_at--942--9872Chr07:19985898..19985922 (25 bp)
TACTCAACTATGTGACAAGCATTTT
LOC_Os07g33440
Target Sequence 
GGTGATGATGCACCATCTTGTCAGGAAGTTCAGGTGGAAGCTCTGCTGCAAGGAGGACACCTTCGCGAGGGACCCCATGC
CGACGCCGCTGCACGGTNTGCCCATCGAAATCGAGCCGAGGATTTCTCCTTGATCATAAGCCAAAAATAAAAATAAAATA
AAATGGNCAACAATGAGCAATCACGACATGAATGTTGCATTGCAATTTTTTATTTTTTGATCAAGGGCAGCATGGCCATT
GCAATTTTTTATAGTNAGGATAGAATAAGATTGTTCAGTGCAGTGACAATGTAGNCAAGGAACTTACACTTTGTGTAAAA
TCAGCAAATTTGTCACTCATGTATGTGGCATTTGAGATGACGCTACTCAACTATGTGACAAGCATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26830.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis