Browse Element(s) Details


OsAffx.16541.1.S1_at

Description tigr:9635.m03295
TID=OsAffx.16541.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3347011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33420Os.32947.2.S1_at11/117+19975950..19977736Cytochrome P450 family protein
LOC_Os07g33430NANA7+19978918..19979710hypothetical protein
LOC_Os07g33440Os.26830.1.S1_at11/117+19984018..19985974Cytochrome P450 family protein, expressed
LOC_Os07g33440Os.20627.3.S1_x_at2/117+19984018..19985974Cytochrome P450 family protein, expressed
LOC_Os07g33450NANA7+19987442..19994662retrotransposon protein, putative, unclassified
LOC_Os07g33460NANA7+19998290..19998619hypothetical protein
LOC_Os07g33470OsAffx.16541.1.S1_at11/117+20001785..20002951hypothetical protein
LOC_Os07g33480Os.33604.1.S1_a_at11/117+20011045..20013844Cytochrome P450 family protein, expressed
LOC_Os07g33480OsAffx.13005.1.A1_at2/117+20011045..20013844Cytochrome P450 family protein, expressed
LOC_Os07g33490NANA7+20018823..20020775transposon protein, putative, unclassified
LOC_Os07g33500OsAffx.20329.1.S1_at7/117+20021322..20025734retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g33510OsAffx.28575.1.S1_at1/117+20026085..20027311hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16541.1.S1_at--362--1011Chr07:20001826..20001850 (25 bp)
AGGTTGGGACGTTGGGTGCCTGCGC
LOC_Os07g33470
OsAffx.16541.1.S1_at--1128--5391Chr07:20001910..20001934 (25 bp)
GAAGCGGGCACGGAAGGCTGGCGAC
LOC_Os07g33470
OsAffx.16541.1.S1_at--485--4091Chr07:20002708..20002727 (20 bp)
CGACGAGGTAGTGGCATTTGGTCAC
LOC_Os07g33470
OsAffx.16541.1.S1_at--487--6931Chr07:20002710..20002734 (25 bp)
GTAGTGGCATTTGGTCACCGGCCAT
LOC_Os07g33470
OsAffx.16541.1.S1_at--313--7831Chr07:20002722..20002746 (25 bp)
GGTCACCGGCCATCCAGGACTGCAA
LOC_Os07g33470
OsAffx.16541.1.S1_at--883--951Chr07:20002737..20002761 (25 bp)
AGGACTGCAACCTGTATGGCCTTGC
LOC_Os07g33470
OsAffx.16541.1.S1_at--1041--10091Chr07:20002751..20002775 (25 bp)
TATGGCCTTGCTTCGGGTCCTTGTA
LOC_Os07g33470
OsAffx.16541.1.S1_at--840--10691Chr07:20002758..20002782 (25 bp)
TTGCTTCGGGTCCTTGTACCCTTGT
LOC_Os07g33470
OsAffx.16541.1.S1_at--303--10811Chr07:20002779..20002803 (25 bp)
TTGTCCACCACATCTTTATCAGTTG
LOC_Os07g33470
OsAffx.16541.1.S1_at--311--2091Chr07:20002788..20002812 (25 bp)
ACATCTTTATCAGTTGCATTCGCAA
LOC_Os07g33470
OsAffx.16541.1.S1_at--920--6651Chr07:20002800..20002824 (25 bp)
GTTGCATTCGCAATCGATGGTATGC
LOC_Os07g33470
Target Sequence 
AGGTTGGGACGTTGGGTGCCTGCGCGGGGGCGGAGGGCGTGAAGAAGAGGCCGAGGAAGGGCGCGGCGCCCGGTGGGCTG
CGCGGAAGCGGGCACGGAAGGCTGGCGACGAGGTAGTGGCATTTGGTCACCGGCCATCCAGGACTGCAACCTGTATGGCC
TTGCTTCGGGTCCTTGTACCCTTGTCCACCACATCTTTATCAGTTGCATTCGCAATCGATGGTATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16541.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis