Browse Element(s) Details


Os.33604.1.S1_a_at

Description gb:AK099924.1
DB_XREF= gi:32985133
TID=Os.33604.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.33604 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Cytochrome P450 85 (Dwarf protein) (OSJNBa0036M16.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116M09, full insert sequence.
FL= gb:AK099924.1 gb:AK061878.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3348011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33450NANA7+19987442..19994662retrotransposon protein, putative, unclassified
LOC_Os07g33460NANA7+19998290..19998619hypothetical protein
LOC_Os07g33470OsAffx.16541.1.S1_at11/117+20001785..20002951hypothetical protein
LOC_Os07g33480Os.33604.1.S1_a_at11/117+20011045..20013844Cytochrome P450 family protein, expressed
LOC_Os07g33480OsAffx.13005.1.A1_at2/117+20011045..20013844Cytochrome P450 family protein, expressed
LOC_Os07g33490NANA7+20018823..20020775transposon protein, putative, unclassified
LOC_Os07g33500OsAffx.20329.1.S1_at7/117+20021322..20025734retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g33510OsAffx.28575.1.S1_at1/117+20026085..20027311hypothetical protein
LOC_Os07g33520NANA7+20030321..20030713hypothetical protein
LOC_Os07g33530Os.14919.1.S1_at7/117+20034888..20036455hypothetical protein
LOC_Os07g33530Os.56216.1.S1_at1/117+20034888..20036455hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0016132biological_processbrassinosteroid biosynthesis
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33604.1.S1_a_at--811--6871Chr07:20013202..20013226 (25 bp)
GTATTCACAGCCCAATCTGTTACAC
LOC_Os07g33480
Os.33604.1.S1_a_at--1160--6311Chr07:20013232..20013256 (25 bp)
GATGCAAATATTTTCCCTGAGCCAA
LOC_Os07g33480
Os.33604.1.S1_a_at--1083--10291Chr07:20013243..20013267 (25 bp)
TTTCCCTGAGCCAAGCAATTTCGAC
LOC_Os07g33480
Os.33604.1.S1_a_at--340--191Chr07:20013260..20013284 (25 bp)
ATTTCGACCCTGCTCGATTCGAGAA
LOC_Os07g33480
Os.33604.1.S1_a_at--233--1431Chr07:20013281..20013305 (25 bp)
AGAACAACTCTTCGATTCCTCCTTA
LOC_Os07g33480
Os.33604.1.S1_a_at--337--1571Chr07:20013433..20013457 (25 bp)
AGCTACAAGAAAGATCCGTCTCCGA
LOC_Os07g33480
Os.33604.1.S1_a_at--604--1231Chr07:20013477..20013501 (25 bp)
AGTTGAACTGGAGCCGAGATGCCTC
LOC_Os07g33480
Os.33604.1.S1_a_at--711--1291Chr07:20013493..20013517 (25 bp)
AGATGCCTCCCTGAAAATGCTCATG
LOC_Os07g33480
Os.33604.1.S1_a_at--973--3651Chr07:20013529..20013553 (25 bp)
CTTCATGTCCGTGCATTTTGAGTTT
LOC_Os07g33480
Os.33604.1.S1_a_at--649--5631Chr07:20013683..20013707 (25 bp)
GACACTATCTATATTCGGATTCTCC
LOC_Os07g33480
Os.33604.1.S1_a_at--28--3971Chr07:20013698..20013722 (25 bp)
CGGATTCTCCAACTTTTGTTATACA
LOC_Os07g33480
Target Sequence 
GTATTCACAGCCCAATCTGTTACACATTTGGATGCAAATATTTTCCCTGAGCCAAGCAATTTCGACCCTGCTCGATTCGA
GAACAACTCTTCGATTCCTCCTTATTGCTTTGTGCCATTTGGGGGAGGTCCAAGAATGTGTCCTGGAAACGAGTTTGCAA
GGACTGAGACATTGGTGACCATGCACTCCTTGGTGACACAGTTCAGGTGGAAGCTGTGCTGCAAGGAAGAAAGCTACAAG
AAAGATCCGTCTCCGACGCCTCTTCTTGGACTCCCAGTTGAACTGGAGCCGAGATGCCTCCCTGAAAATGCTCATGCTTA
AAAATTGCTTCATGTCCGTGCATTTTGAGTTTATGCTATTTGCAGTTAGCCAGAGAGAATCATGGAGTAATGCAGTACAA
ATCCAAGAACTGACAAGAATTCAAGTCCAAATTCAATCCTTAGATTGAGAAAAACAAAAGCAAATCTATATGAACAATAT
AGACACTATCTATATTCGGATTCTCCAACTTTTGTTATACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33604.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis