Browse Element(s) Details


OsAffx.13005.1.A1_at

Description tigr:9631.m02395
TID=OsAffx.13005.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g334802/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33450NANA7+19987442..19994662retrotransposon protein, putative, unclassified
LOC_Os07g33460NANA7+19998290..19998619hypothetical protein
LOC_Os07g33470OsAffx.16541.1.S1_at11/117+20001785..20002951hypothetical protein
LOC_Os07g33480Os.33604.1.S1_a_at11/117+20011045..20013844Cytochrome P450 family protein, expressed
LOC_Os07g33480OsAffx.13005.1.A1_at2/117+20011045..20013844Cytochrome P450 family protein, expressed
LOC_Os07g33490NANA7+20018823..20020775transposon protein, putative, unclassified
LOC_Os07g33500OsAffx.20329.1.S1_at7/117+20021322..20025734retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g33510OsAffx.28575.1.S1_at1/117+20026085..20027311hypothetical protein
LOC_Os07g33520NANA7+20030321..20030713hypothetical protein
LOC_Os07g33530Os.14919.1.S1_at7/117+20034888..20036455hypothetical protein
LOC_Os07g33530Os.56216.1.S1_at1/117+20034888..20036455hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0016132biological_processbrassinosteroid biosynthesis
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13005.1.A1_at--1094--3911Chr03:13978032..13978053 (22 bp)
CGGCCAGAGCATCTCCGTGCTAGCT
NONE
OsAffx.13005.1.A1_at--178--8452Chr07:20011217..20011606 (25 bp)
GGCCAGAGCATCTCCGTGCTAGCTT
LOC_Os07g33480
OsAffx.13005.1.A1_at--1116--4412Chr07:20011218..20011607 (25 bp)
GCCAGAGCATCTCCGTGCTAGCTTT
LOC_Os07g33480
OsAffx.13005.1.A1_at--749--4351Chr03:13978032..13978056 (25 bp)
CCAGAGCATCTCCGTGCTAGCTTTG
NONE
OsAffx.13005.1.A1_at--266--3431Chr03:13978033..13978057 (25 bp)
CAGAGCATCTCCGTGCTAGCTTTGA
NONE
OsAffx.13005.1.A1_at--134--1371Chr03:13978034..13978058 (25 bp)
AGAGCATCTCCGTGCTAGCTTTGAC
NONE
OsAffx.13005.1.A1_at--183--4251Chr03:13978043..13978067 (25 bp)
CCGTGCTAGCTTTGACTCCCTGGTG
NONE
OsAffx.13005.1.A1_at--527--3991Chr03:13978044..13978068 (25 bp)
CGTGCTAGCTTTGACTCCCTGGTGC
NONE
OsAffx.13005.1.A1_at--83--7331Chr03:13978045..13978069 (25 bp)
GTGCTAGCTTTGACTCCCTGGTGCT
NONE
OsAffx.13005.1.A1_at--218--9091Chr03:13978046..13978070 (25 bp)
TGCTAGCTTTGACTCCCTGGTGCTC
NONE
Target Sequence 
CGGCCAGAGCATCTCCGTGCTAGCTTTGACTCCCTGGTGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13005.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis