Browse Element(s) Details


Os.20627.3.S1_x_at

Description gb:NM_187438.1
DB_XREF= gi:34901961
GEN=OJ1793_E11.19
TID=Os.20627.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.20627 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) 5-alpha-taxadienol-10-beta-hydroxylase-like protein (OJ1793_E11.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) 5-alpha-taxadienol-10-beta-hydroxylase-like protein (OJ1793_E11.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3362011/11Cytochrome P450 family protein, expressed
LOC_Os07g334402/11Cytochrome P450 family protein, expressed
LOC_Os07g336002/11hypothetical protein
LOC_Os05g285401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g465701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33580Os.43963.1.S1_at11/117+20061700..20063661Cytochrome P450 family protein, expressed
LOC_Os07g33580Os.43963.1.S1_x_at11/117+20061700..20063661Cytochrome P450 family protein, expressed
LOC_Os07g33580Os.14065.2.S1_x_at1/117+20061700..20063661Cytochrome P450 family protein, expressed
LOC_Os07g33600OsAffx.1378.1.S1_at9/117+20065859..20066988hypothetical protein
LOC_Os07g33600OsAffx.1378.1.S1_x_at9/117+20065859..20066988hypothetical protein
LOC_Os07g33600Os.20627.3.S1_x_at2/117+20065859..20066988hypothetical protein
LOC_Os07g33610NANA7+20077883..20079549Cytochrome P450 family protein
LOC_Os07g33620Os.20627.2.S1_at11/117+20083245..20084916Cytochrome P450 family protein, expressed
LOC_Os07g33620Os.20627.3.S1_x_at11/117+20083245..20084916Cytochrome P450 family protein, expressed
LOC_Os07g33620OsAffx.1378.1.S1_x_at1/117+20083245..20084916Cytochrome P450 family protein, expressed
LOC_Os07g33630Os.8407.1.S1_at10/117+20085461..20091562potyviral helper component protease-interacting protein 2, putative, expressed
LOC_Os07g33640NANA7+20096291..20097106hypothetical protein
LOC_Os07g33650Os.10455.1.S1_at11/117+20105113..20108087expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0016132biological_processbrassinosteroid biosynthesis
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20627.3.S1_x_at--946--3794Chr07:20084215..20084320 (25 bp)
CTCGCCGCCATGCACGAGGAGATCG
LOC_Os07g33620
Os.20627.3.S1_x_at--173--4132Chr07:20084393..20084417 (25 bp)
CGCAGGAGACGCTCCGCATGGTGCC
LOC_Os07g33620
Os.20627.3.S1_x_at--113--8811Chr07:20084423..20084447 (25 bp)
TGTTCGGCAGCTTCAGGAGGGCCCT
LOC_Os07g33620
Os.20627.3.S1_x_at--1028--3712Chr07:20084472..20084496 (25 bp)
CTACGTCATCCCGAAAGGGTGGCAG
LOC_Os07g33620
Os.20627.3.S1_x_at--1122--492Chr07:20084479..20084503 (25 bp)
ATCCCGAAAGGGTGGCAGGTGTTCT
LOC_Os07g33620
Os.20627.3.S1_x_at--171--4672Chr07:20084513..20084537 (25 bp)
GCGTGACGCACATGGACCCGGCCAT
LOC_Os07g33620
Os.20627.3.S1_x_at--582--9531Chr07:20084537..20084561 (25 bp)
TCTACCACGACCCGGACAAGTTCGA
LOC_Os07g33620
Os.20627.3.S1_x_at--485--651Chr07:20084686..20084710 (25 bp)
ATGCACTACCTGGTGAGGCACTTCA
LOC_Os07g33620
Os.20627.3.S1_x_at--607--931Chr07:20084701..20084725 (25 bp)
AGGCACTTCAGGTGGAGGCTCTGCT
LOC_Os07g33620
Os.20627.3.S1_x_at--683--6171Chr07:20084734..20084758 (25 bp)
GAGGAGAACACCTTCGTCAGGGACC
LOC_Os07g33620
Os.20627.3.S1_x_at--589--1431Chr07:20084738..20084762 (25 bp)
AGAACACCTTCGTCAGGGACCCGCT
LOC_Os07g33620
Target Sequence 
CTCGCCGCCATGCACGAGGAGATCGCGAGGAGCAAGCGAGACGGCGAGGCGCTGACATGGGAGGACGTGGCGAGGATGAA
GCTGACATGGCGCGTCGCGCAGGAGACGCTCCGCATGGTGCCCCCGGTGTTCGGCAGCTTCAGGAGGGCCCTCGAGGACG
TCGAGCTCGACGGCGGCTACGTCATCCCGAAAGGGTGGCAGGTGTTCTGGGCGCCGTGCGTGACGCACATGGACCCGGCC
ATCTACCACGACCCGGACAAGTTCGACCCGTCGCGGTTCGACGCCCAGGCGGCGGCGTCGGCGCCGCCGCCGTACTCGTT
CGTGGCGTTCGGCGGCGGGCCGAGGATCTGCCCCGGGATGGAGCTCGCGAGGGTGGAGACGCTGGTGACGATGCACTACC
TGGTGAGGCACTTCAGGTGGAGGCTCTGCTGCGGGGGGGAGGAGAACACCTTCGTCAGGGACCCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20627.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis