Browse Element(s) Details


Os.20627.2.S1_at

Description gb:AK109627.1
DB_XREF= gi:32994836
TID=Os.20627.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20627 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) 5-alpha-taxadienol-10-beta-hydroxylase-like protein (OJ1793_E11.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-138-B12, full insert sequence.
FL= gb:AK109627.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3362011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33580Os.43963.1.S1_at11/117+20061700..20063661Cytochrome P450 family protein, expressed
LOC_Os07g33580Os.43963.1.S1_x_at11/117+20061700..20063661Cytochrome P450 family protein, expressed
LOC_Os07g33580Os.14065.2.S1_x_at1/117+20061700..20063661Cytochrome P450 family protein, expressed
LOC_Os07g33600OsAffx.1378.1.S1_at9/117+20065859..20066988hypothetical protein
LOC_Os07g33600OsAffx.1378.1.S1_x_at9/117+20065859..20066988hypothetical protein
LOC_Os07g33600Os.20627.3.S1_x_at2/117+20065859..20066988hypothetical protein
LOC_Os07g33610NANA7+20077883..20079549Cytochrome P450 family protein
LOC_Os07g33620Os.20627.2.S1_at11/117+20083245..20084916Cytochrome P450 family protein, expressed
LOC_Os07g33620Os.20627.3.S1_x_at11/117+20083245..20084916Cytochrome P450 family protein, expressed
LOC_Os07g33620OsAffx.1378.1.S1_x_at1/117+20083245..20084916Cytochrome P450 family protein, expressed
LOC_Os07g33630Os.8407.1.S1_at10/117+20085461..20091562potyviral helper component protease-interacting protein 2, putative, expressed
LOC_Os07g33640NANA7+20096291..20097106hypothetical protein
LOC_Os07g33650Os.10455.1.S1_at11/117+20105113..20108087expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0016132biological_processbrassinosteroid biosynthesis
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20627.2.S1_at--26--251Chr07:20084846..20084870 (25 bp)
ATATAGTAGTAATTCTCTATCTTGT
LOC_Os07g33620
Os.20627.2.S1_at--211--111Chr07:20084857..20084881 (25 bp)
ATTCTCTATCTTGTTAGACTTGCTG
LOC_Os07g33620
Os.20627.2.S1_at--149--10591Chr07:20084858..20084882 (25 bp)
TTCTCTATCTTGTTAGACTTGCTGT
LOC_Os07g33620
Os.20627.2.S1_at--232--3771Chr07:20084860..20084884 (25 bp)
CTCTATCTTGTTAGACTTGCTGTTC
LOC_Os07g33620
Os.20627.2.S1_at--994--10151Chr07:20084863..20084887 (25 bp)
TATCTTGTTAGACTTGCTGTTCATC
LOC_Os07g33620
Os.20627.2.S1_at--603--431Chr07:20084864..20084888 (25 bp)
ATCTTGTTAGACTTGCTGTTCATCA
LOC_Os07g33620
Os.20627.2.S1_at--1082--3611Chr07:20084866..20084890 (25 bp)
CTTGTTAGACTTGCTGTTCATCAAC
LOC_Os07g33620
Os.20627.2.S1_at--128--6791Chr07:20084869..20084893 (25 bp)
GTTAGACTTGCTGTTCATCAACAAT
LOC_Os07g33620
Os.20627.2.S1_at--539--10031Chr07:20084871..20084895 (25 bp)
TAGACTTGCTGTTCATCAACAATTT
LOC_Os07g33620
Os.20627.2.S1_at--301--10551Chr07:20084882..20084906 (25 bp)
TTCATCAACAATTTCCAAGAAGGGA
LOC_Os07g33620
Os.20627.2.S1_at--281--3571Chr07:20084884..20084908 (25 bp)
CATCAACAATTTCCAAGAAGGGAGA
LOC_Os07g33620
Target Sequence 
ATATAGTAGTAATTCTCTATCTTGTTAGACTTGCTGTTCATCAACAATTTCCAAGAAGGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20627.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis