Browse Element(s) Details


Os.43963.1.S1_at

Description gb:CB676566
DB_XREF= gi:29680291
DB_XREF=OSJNEe12O05.r
CLONE=OSJNEe12O05
TID=Os.43963.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.43963 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) 5-alpha-taxadienol-10-beta-hydroxylase-like protein (OJ1793_E11.18), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3358011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33540NANA7+20040277..20042078Cytochrome P450 family protein
LOC_Os07g33550Os.32947.2.S1_at1/117+20044189..20046008Cytochrome P450 family protein
LOC_Os07g33560Os.14065.1.S1_at11/117+20048553..20052351Cytochrome P450 family protein, expressed
LOC_Os07g33560Os.14065.2.S1_x_at11/117+20048553..20052351Cytochrome P450 family protein, expressed
LOC_Os07g33570NANA7+20054923..20057884retrotransposon protein, putative, unclassified
LOC_Os07g33580Os.43963.1.S1_at11/117+20061700..20063661Cytochrome P450 family protein, expressed
LOC_Os07g33580Os.43963.1.S1_x_at11/117+20061700..20063661Cytochrome P450 family protein, expressed
LOC_Os07g33580Os.14065.2.S1_x_at1/117+20061700..20063661Cytochrome P450 family protein, expressed
LOC_Os07g33600OsAffx.1378.1.S1_at9/117+20065859..20066988hypothetical protein
LOC_Os07g33600OsAffx.1378.1.S1_x_at9/117+20065859..20066988hypothetical protein
LOC_Os07g33600Os.20627.3.S1_x_at2/117+20065859..20066988hypothetical protein
LOC_Os07g33610NANA7+20077883..20079549Cytochrome P450 family protein
LOC_Os07g33620Os.20627.2.S1_at11/117+20083245..20084916Cytochrome P450 family protein, expressed
LOC_Os07g33620Os.20627.3.S1_x_at11/117+20083245..20084916Cytochrome P450 family protein, expressed
LOC_Os07g33620OsAffx.1378.1.S1_x_at1/117+20083245..20084916Cytochrome P450 family protein, expressed
LOC_Os07g33630Os.8407.1.S1_at10/117+20085461..20091562potyviral helper component protease-interacting protein 2, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0016132biological_processbrassinosteroid biosynthesis
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43963.1.S1_at--791--3311Chr07:20063529..20063553 (25 bp)
CACATGTTTCTGTCTATTACCATGC
LOC_Os07g33580
Os.43963.1.S1_at--967--731Chr07:20063532..20063556 (25 bp)
ATGTTTCTGTCTATTACCATGCGTT
LOC_Os07g33580
Os.43963.1.S1_at--39--6851Chr07:20063534..20063558 (25 bp)
GTTTCTGTCTATTACCATGCGTTTC
LOC_Os07g33580
Os.43963.1.S1_at--320--10611Chr07:20063536..20063560 (25 bp)
TTCTGTCTATTACCATGCGTTTCAG
LOC_Os07g33580
Os.43963.1.S1_at--2--9652Chr07:20063557..20063581 (25 bp)
TCAGTTTATGTTTTCTCCAGTTTAG
LOC_Os07g33580
Os.43963.1.S1_at--991--6811Chr07:20063560..20063584 (25 bp)
GTTTATGTTTTCTCCAGTTTAGTTG
LOC_Os07g33580
Os.43963.1.S1_at--337--10351Chr07:20063562..20063586 (25 bp)
TTATGTTTTCTCCAGTTTAGTTGAG
LOC_Os07g33580
Os.43963.1.S1_at--855--6791Chr07:20063566..20063590 (25 bp)
GTTTTCTCCAGTTTAGTTGAGGTGT
LOC_Os07g33580
Os.43963.1.S1_at--253--10591Chr07:20063569..20063593 (25 bp)
TTCTCCAGTTTAGTTGAGGTGTCAA
LOC_Os07g33580
Os.43963.1.S1_at--829--3811Chr07:20063571..20063595 (25 bp)
CTCCAGTTTAGTTGAGGTGTCAAGA
LOC_Os07g33580
Os.43963.1.S1_at--413--10451Chr07:20063578..20063602 (25 bp)
TTAGTTGAGGTGTCAAGAGTGTTGC
LOC_Os07g33580
Target Sequence 
CACATGTTTCTGTCTATTACCATGCGTTTCAGTTTATGTTTTCTCCAGTTTAGTTGAGGTGTCAAGAGTGTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43963.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis