Browse Element(s) Details


OsAffx.1378.1.S1_x_at

Description gb:NM_187432.1
DB_XREF= gi:34901949
GEN=OJ1793_E11.13
TID=OsAffx.1378.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (OJ1793_E11.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g336009/11hypothetical protein
LOC_Os07g336201/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33540NANA7+20040277..20042078Cytochrome P450 family protein
LOC_Os07g33550Os.32947.2.S1_at1/117+20044189..20046008Cytochrome P450 family protein
LOC_Os07g33560Os.14065.1.S1_at11/117+20048553..20052351Cytochrome P450 family protein, expressed
LOC_Os07g33560Os.14065.2.S1_x_at11/117+20048553..20052351Cytochrome P450 family protein, expressed
LOC_Os07g33570NANA7+20054923..20057884retrotransposon protein, putative, unclassified
LOC_Os07g33580Os.43963.1.S1_at11/117+20061700..20063661Cytochrome P450 family protein, expressed
LOC_Os07g33580Os.43963.1.S1_x_at11/117+20061700..20063661Cytochrome P450 family protein, expressed
LOC_Os07g33580Os.14065.2.S1_x_at1/117+20061700..20063661Cytochrome P450 family protein, expressed
LOC_Os07g33600OsAffx.1378.1.S1_at9/117+20065859..20066988hypothetical protein
LOC_Os07g33600OsAffx.1378.1.S1_x_at9/117+20065859..20066988hypothetical protein
LOC_Os07g33600Os.20627.3.S1_x_at2/117+20065859..20066988hypothetical protein
LOC_Os07g33610NANA7+20077883..20079549Cytochrome P450 family protein
LOC_Os07g33620Os.20627.2.S1_at11/117+20083245..20084916Cytochrome P450 family protein, expressed
LOC_Os07g33620Os.20627.3.S1_x_at11/117+20083245..20084916Cytochrome P450 family protein, expressed
LOC_Os07g33620OsAffx.1378.1.S1_x_at1/117+20083245..20084916Cytochrome P450 family protein, expressed
LOC_Os07g33630Os.8407.1.S1_at10/117+20085461..20091562potyviral helper component protease-interacting protein 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0016132biological_processbrassinosteroid biosynthesis
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1378.1.S1_x_at--684--2731Chr07:20066760..20066784 (25 bp)
AAGCAAGAAGGCGAGGCCCTGACAC
LOC_Os07g33600
OsAffx.1378.1.S1_x_at--749--4531Chr07:20066775..20066799 (25 bp)
GCCCTGACACGGGAGGACGTCACGA
LOC_Os07g33600
OsAffx.1378.1.S1_x_at--761--5751Chr07:20066790..20066814 (25 bp)
GACGTCACGAGGATGAAGCTGTCGT
LOC_Os07g33600
OsAffx.1378.1.S1_x_at--291--4591Chr07:20066823..20066847 (25 bp)
GCGCAGGAGAGCACCCGAGGACATC
LOC_Os07g33600
OsAffx.1378.1.S1_x_at--383--6011Chr07:20066829..20066853 (25 bp)
GAGAGCACCCGAGGACATCGAGGTC
LOC_Os07g33600
OsAffx.1378.1.S1_x_at--546--5731Chr07:20066854..20066878 (25 bp)
GACGGCTACGTCATCCCGAAAGGGT
LOC_Os07g33600
OsAffx.1378.1.S1_x_at--430--3491Chr07:20066881..20066905 (25 bp)
CAGGCGTTCTGGTCGCCATGCGTGA
LOC_Os07g33600
OsAffx.1378.1.S1_x_at--710--612Chr07:20066898..20066922 (25 bp)
ATGCGTGACGCACATGGACCCGGCC
LOC_Os07g33600
OsAffx.1378.1.S1_x_at--1050--831Chr07:20066911..20066935 (25 bp)
ATGGACCCGGCCAAGTTCTTGCCGT
LOC_Os07g33600
OsAffx.1378.1.S1_x_at--912--4771Chr07:20066979..20067003 (25 bp)
GCTGCCCTAATCGTTCGTGGCGTTC
NONE
OsAffx.1378.1.S1_x_at--431--5971Chr07:20067119..20067143 (25 bp)
GAGAACACGTTCGTCAGGGACCCGC
NONE
Target Sequence 
AAGCAAGAAGGCGAGGCCCTGACACGGGAGGACGTCACGAGGATGAAGCTGTCGTGGCGCGTCGCGCAGGAGAGCACCCG
AGGACATCGAGGTCGACGGCTACGTCATCCCGAAAGGGTGGCAGGCGTTCTGGTCGCCATGCGTGACGCACATGGACCCG
GCCAAGTTCTTGCCGTCCCGGTTCGACGCCCAGGCGGCGTCGGCGGCGCCACCGCCGCCGCTGCCCTAATCGTTCGTGGC
GTTCGGCGGCGGGCCGAGGGTGGCAGCTGTGCTGCGGCCTGCGGGGAGGAGAACACGTTCGTCAGGGACCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1378.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis