Browse Element(s) Details


Os.8407.1.S1_at

Description gb:AU095765
DB_XREF= gi:8858447
DB_XREF=AU095765
CLONE=S10848
TID=Os.8407.1
CNT=10
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8407 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU032583(S10794),C98387(C3061),D46248(S10794), D23593(C3061)~similar to Arabidopsis thaliana chromosome 4, At4g27060~unknown protein (OJ1793_E11.20), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3363010/11potyviral helper component protease-interacting protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33580Os.43963.1.S1_at11/117+20061700..20063661Cytochrome P450 family protein, expressed
LOC_Os07g33580Os.43963.1.S1_x_at11/117+20061700..20063661Cytochrome P450 family protein, expressed
LOC_Os07g33580Os.14065.2.S1_x_at1/117+20061700..20063661Cytochrome P450 family protein, expressed
LOC_Os07g33600OsAffx.1378.1.S1_at9/117+20065859..20066988hypothetical protein
LOC_Os07g33600OsAffx.1378.1.S1_x_at9/117+20065859..20066988hypothetical protein
LOC_Os07g33600Os.20627.3.S1_x_at2/117+20065859..20066988hypothetical protein
LOC_Os07g33610NANA7+20077883..20079549Cytochrome P450 family protein
LOC_Os07g33620Os.20627.2.S1_at11/117+20083245..20084916Cytochrome P450 family protein, expressed
LOC_Os07g33620Os.20627.3.S1_x_at11/117+20083245..20084916Cytochrome P450 family protein, expressed
LOC_Os07g33620OsAffx.1378.1.S1_x_at1/117+20083245..20084916Cytochrome P450 family protein, expressed
LOC_Os07g33630Os.8407.1.S1_at10/117+20085461..20091562potyviral helper component protease-interacting protein 2, putative, expressed
LOC_Os07g33640NANA7+20096291..20097106hypothetical protein
LOC_Os07g33650Os.10455.1.S1_at11/117+20105113..20108087expressed protein
LOC_Os07g33660Os.36706.1.S1_at2/117+20111898..20113159expressed protein
LOC_Os07g33670Os.24572.1.S1_at6/117+20113836..20121270patatin family protein, putative, expressed
LOC_Os07g33670OsAffx.21802.1.S1_at1/117+20113836..20121270patatin family protein, putative, expressed
LOC_Os07g33670OsAffx.18355.1.S1_at1/117+20113836..20121270patatin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009826biological_processunidimensional cell growth
GO:0010031biological_processcircumnutation
GO:0010005cellular_componentcortical microtubule (sensu Viridiplantae)
GO:0008017molecular_functionmicrotubule binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8407.1.S1_at--361--5351Chr07:20087308..20087332 (25 bp)
GAAGTTGCAAACGAAGTCCTACATG
LOC_Os07g33630
Os.8407.1.S1_at--464--1611NONE
AGCTGGCTTCAGCAGTTGACTGATC
NONE
Os.8407.1.S1_at--1025--3231Chr07:20085850..20085874 (25 bp)
CAACGGATCCGGTTATCTTGGAATC
LOC_Os07g33630
Os.8407.1.S1_at--314--1431Chr07:20085812..20085836 (25 bp)
AGAACGACCTCTTACTGGGATTACA
LOC_Os07g33630
Os.8407.1.S1_at--883--8631Chr07:20085797..20085821 (25 bp)
TGGGATTACACGAAGCTACTGCCAT
LOC_Os07g33630
Os.8407.1.S1_at--101--2731Chr07:20085726..20085750 (25 bp)
AAGCAGCTAGCTTCATCATGGCGGA
LOC_Os07g33630
Os.8407.1.S1_at--164--871Chr07:20085709..20085733 (25 bp)
ATGGCGGATTGATCTGCAGCAGCTT
LOC_Os07g33630
Os.8407.1.S1_at--982--5051Chr07:20085691..20085715 (25 bp)
GCAGCTTATCAGTTAGGGCCATCGG
LOC_Os07g33630
Os.8407.1.S1_at--136--10451Chr07:20085679..20085703 (25 bp)
TTAGGGCCATCGGTTGTTGACATGA
LOC_Os07g33630
Os.8407.1.S1_at--1043--6511Chr07:20085517..20085541 (25 bp)
GATATTGTTTACCTCATAACCTGTG
LOC_Os07g33630
Os.8407.1.S1_at--380--351Chr07:20085502..20085526 (25 bp)
ATAACCTGTGTTGGCTTTCCTATTT
LOC_Os07g33630
Target Sequence 
GAAGTTGCAAACGAAGTCCTACATGCTGTTGGACAATTTCTTGTGGAAGAAAGCTTCTATGATATAGCTTTGAGCTGGCT
TCAGCAGTTGACTGATCTGGTAATGGACAACGGATCCGGTTATCTTGGAATCCCCCTAGATGCGAAGAACGACCTCTTAC
TGGGATTACACGAAGCTACTGCCATNGAGTTGCCTGATGATTGGGAGGGGGCNACGCCGGTTCAGATAATGAAGCAGCTA
GCTTCATCATGGCGGATTGATCTGCAGCAGCTTATCAGTTAGGGCCATCGGTTGTTGACATGAGTTAATTTCATTTGTTC
ATTNCTGCCTATTTTTTCTCTATATATCTTGCTATTAGGGCTATAAGTATTAGGTTTGACAGAACCTTTGAGTGGAACTG
TGTTGACATGGATTGGTGTTGTACGGGGAAATATGATGTTGATATTGTTTACCTCATAACCTGTGTTGGCTTTCCTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8407.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis