Browse Element(s) Details


Os.10455.1.S1_at

Description gb:AK120609.1
DB_XREF= gi:37990232
TID=Os.10455.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10455 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU077505(C52303),AU077504(C52303)~unknown protein (OJ1793_E11.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151G08, full insert sequence.
FL= gb:AK072131.1 gb:AK120609.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3365011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33620Os.20627.2.S1_at11/117+20083245..20084916Cytochrome P450 family protein, expressed
LOC_Os07g33620Os.20627.3.S1_x_at11/117+20083245..20084916Cytochrome P450 family protein, expressed
LOC_Os07g33620OsAffx.1378.1.S1_x_at1/117+20083245..20084916Cytochrome P450 family protein, expressed
LOC_Os07g33630Os.8407.1.S1_at10/117+20085461..20091562potyviral helper component protease-interacting protein 2, putative, expressed
LOC_Os07g33640NANA7+20096291..20097106hypothetical protein
LOC_Os07g33650Os.10455.1.S1_at11/117+20105113..20108087expressed protein
LOC_Os07g33660Os.36706.1.S1_at2/117+20111898..20113159expressed protein
LOC_Os07g33670Os.24572.1.S1_at6/117+20113836..20121270patatin family protein, putative, expressed
LOC_Os07g33670OsAffx.21802.1.S1_at1/117+20113836..20121270patatin family protein, putative, expressed
LOC_Os07g33670OsAffx.18355.1.S1_at1/117+20113836..20121270patatin family protein, putative, expressed
LOC_Os07g33680Os.23201.1.S1_at11/117+20125344..20127139succinate dehydrogenase subunit 3, putative, expressed
LOC_Os07g33690Os.57049.1.S1_at11/117+20127954..20133545NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10455.1.S1_at--247--991Chr07:20107617..20107641 (25 bp)
AGGAGGAGCTCTAGTACCACGCCGG
LOC_Os07g33650
Os.10455.1.S1_at--809--2611Chr07:20107764..20107788 (25 bp)
AACCCGATGAGCAGCCGGCTGAGGA
LOC_Os07g33650
Os.10455.1.S1_at--903--972Chr07:20107785..20107809 (25 bp)
AGGAGGCTGGGATTCTCCAAGCTGT
LOC_Os07g33650
Os.10455.1.S1_at--116--3251Chr07:20107802..20107826 (25 bp)
CAAGCTGTCGGAGACGTTCGCGTGA
LOC_Os07g33650
Os.10455.1.S1_at--117--5051Chr07:20107827..20107851 (25 bp)
GCAGAATCAGATCGTCTTCAGTCCT
LOC_Os07g33650
Os.10455.1.S1_at--317--9571Chr07:20107841..20107865 (25 bp)
TCTTCAGTCCTGACGGCGAGCTGTG
LOC_Os07g33650
Os.10455.1.S1_at--826--5891Chr07:20107858..20107882 (25 bp)
GAGCTGTGTCGCGAATTGCAATTCG
LOC_Os07g33650
Os.10455.1.S1_at--727--6831Chr07:20107942..20107966 (25 bp)
GTTTCTCTCGTGTATGGGTATGACC
LOC_Os07g33650
Os.10455.1.S1_at--1116--5951Chr07:20107984..20108008 (25 bp)
GAGAAGCGTTTTGCCATCGTCGCAA
LOC_Os07g33650
Os.10455.1.S1_at--19--7231Chr07:20108002..20108026 (25 bp)
GTCGCAATGCAAGTTCTTCGTGGTG
LOC_Os07g33650
Os.10455.1.S1_at--562--6271Chr07:20108035..20108059 (25 bp)
GATGTACCCGTAATTGCGTATTTTA
LOC_Os07g33650
Target Sequence 
AGGAGGAGCTCTAGTACCACGCCGGCCAGCTCCCCGATGCTCGCGGCGGACGTCGACCGGAGCGGCGGCGGCGGCAAGGC
GAAGAAGGCGGCGGCGAGGGGGCGCCGCGGCGTCGGCGGCGTGGAGGTGGTGGACGTGAGGTGCGGGAACCCGATGAGCA
GCCGGCTGAGGAGGCTGGGATTCTCCAAGCTGTCGGAGACGTTCGCGTGAGCAGAATCAGATCGTCTTCAGTCCTGACGG
CGAGCTGTGTCGCGAATTGCAATTCGGAATTGCATTATGTTTGCTATAGTAATTATATTGTTGTTATTAAAATTTTCTTT
TGCTGGTTTCTCTCGTGTATGGGTATGACCAAATTAAGTTAATTTATGAGAAGCGTTTTGCCATCGTCGCAATGCAAGTT
CTTCGTGGTGATGTGTATGATGTACCCGTAATTGCGTATTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10455.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis