Browse Element(s) Details


OsAffx.18355.1.S1_at

Description gb:NM_196157.1
DB_XREF= gi:37533673
TID=OsAffx.18355.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0095C06.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2300411/11hypothetical protein
LOC_Os07g336701/11patatin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22980Os.9046.1.S1_x_at10/1110+11649636..11654706Leucine Rich Repeat family protein, expressed
LOC_Os10g22980Os.9046.1.S1_at10/1110+11649636..11654706Leucine Rich Repeat family protein, expressed
LOC_Os10g22980Os.16062.1.S1_at10/1110+11649636..11654706Leucine Rich Repeat family protein, expressed
LOC_Os10g22990NANA10+11658205..11659209Phosphate-induced protein 1 conserved region containing protein
LOC_Os10g23004OsAffx.18355.1.S1_at11/1110+11662463..11665658hypothetical protein
LOC_Os10g23020NANA10+11669997..11670275hypothetical protein
LOC_Os10g23030OsAffx.6743.1.S1_at11/1110+11674593..11678357hypothetical protein
LOC_Os10g23030Os.54455.1.S1_at1/1110+11674593..11678357hypothetical protein
LOC_Os10g23039NANA10+11682308..11682780NA
LOC_Os10g23050Os.46600.1.S1_at11/1110+11684489..11686279Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os10g23060OsAffx.20429.1.S1_at11/1110+11690388..11692922expressed protein
LOC_Os10g23060Os.16804.1.S1_at10/1110+11690388..11692922expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18355.1.S1_at--118--1391Chr10:11663322..11663346 (25 bp)
AGACCGATGGAGAACTTCACATACC
LOC_Os10g23004
OsAffx.18355.1.S1_at--617--9712Chr10:11663234..11663258 (25 bp)
TCAATATTTTTCTCATGGGCAGCCA
LOC_Os10g23004
OsAffx.18355.1.S1_at--400--5511Chr10:11662853..11662877 (25 bp)
GAACAACACAAATTCTCCCGAAGAG
LOC_Os10g23004
OsAffx.18355.1.S1_at--149--3331Chr10:11662751..11662775 (25 bp)
CACTCGGCATCTGCAGAGGCTATAT
LOC_Os10g23004
OsAffx.18355.1.S1_at--726--10771Chr10:11662714..11662738 (25 bp)
TTGAGACAACTTACTGGCTCAGCTA
LOC_Os10g23004
OsAffx.18355.1.S1_at--969--8311Chr10:11662699..11662723 (25 bp)
GGCTCAGCTACTAGTTACCAGATGC
LOC_Os10g23004
OsAffx.18355.1.S1_at--483--9971Chr10:11662684..11662708 (25 bp)
TACCAGATGCCTTTGTACCATACAA
LOC_Os10g23004
OsAffx.18355.1.S1_at--90--3291Chr10:11662561..11662585 (25 bp)
CAAAGGAAGACATGCCCCAATGCTT
LOC_Os10g23004
OsAffx.18355.1.S1_at--178--4211Chr10:11662547..11662571 (25 bp)
CCCCAATGCTTACCAATCTGACAAA
LOC_Os10g23004
OsAffx.18355.1.S1_at--398--8231Chr10:11662505..11662529 (25 bp)
GGCAAGGCAGACTTACACAGTTTCT
LOC_Os10g23004
OsAffx.18355.1.S1_at--373--10491Chr10:11662493..11662517 (25 bp)
TTACACAGTTTCTCGCAGGAAGCAG
LOC_Os10g23004
Target Sequence 
AGACCGATGGAGAACTTCACATACCAAAAAAGAGGAAACATTTGTCACAAGAAGAACATCAGGCAAGACATGAGAATCTG
AAGAACCTTCAATATTTTTCTCATGGGCAGCCANNGNNNNGNNACNNTCNNGGTGATGCATCAGAGAACAACACAAATTC
TCCCGAAGAGCTACAGATTCAAGATGAGTTGGAGGCCGACATCGAGGAGGATTTAGAACGGGAGATCATCGACGACATGT
GCCGTCTCACTCGGCATCTGCAGAGGCTATATCAACAAAGGGATTTGAGACAACTTACTGGCTCAGCTACTAGTTACCAG
ATGCCTTTGTACCATACAACAACTGAAGTTCTTTCTGAGATAAATATCAGGATAAACTTGGATGGGCAATGCAATATCAA
CATAACTAAGATTGAGCAAGATGATGATACAGAAAATCAAAGGAAGACATGCCCCAATGCTTACCAATCTGACAAAAGGC
AAGGGCATGTGAAGGCAAGGCAGACTTACACAGTTTCTCGCAGGAAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18355.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis